Salmonella enterica subsp. enterica serovar Typhimurium UGA14 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhimurium UGA14 RM systems
Ref: Xie,G. et al. unpublished
REBASE ref # 26773
| Sequence length: | GenBank #: | |
| Chromosome: | 4,879,285 bp | CP021462 |
| plasmid pUGA14_1: | 352,906 bp | CP021463 |
| plasmid pUGA14_2: | 115,864 bp | CP021464 |
REBASE acronym: SenUGA14
Org_num: 29454
All begin CCE20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24645 | 110 aa hypothetical protein | |||
| 24650 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenUGA14ORF24655P |
| 24655 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenUGA14ORF24655P |
| 24660 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenUGA14ORF24655P |
| 24665 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10785 | amino acid exporter | |||
| 10790 | V | V.StyUK1DcmP (100% identity) | V.SenUGA14DcmP | |
| 10795 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenUGA14DcmP |
| 10800 | phosphohydrolase | |||
| 11035 | 129 aa hypothetical protein | |||
| 11040 | M | M.StyUK1V (100% identity) | GATC | M.SenUGA14ORF11040P |
| 11045 | 174 aa hypothetical protein | |||
| 18685 | Fis family transcriptional regulator | |||
| 18690 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenUGA14ORF18690P |
| 18695 | DUF2556 domain-containing protein | |||
| 19195 | ribulose-phosphate 3-epimerase | |||
| 19200 | M | M.StyTDamP (100% identity) | GATC | M.SenUGA14DamP |
| 19205 | SPOR domain-containing protein | |||
| 24470 | 363 aa hypothetical protein | |||
| 24475 | RM | StyUK1IV (100% identity) | GATCAG | SenUGA14ORF24475P |
| 24480 | DNA repair protein | |||
| plasmid pUGA14_1 | ||||
| 25750 | 106 aa hypothetical protein | |||
| 25755 | M | M.Ssp15303ORFDP (100% identity) | M.SenUGA14ORF25755P | |
| 25760 | 202 aa hypothetical protein | |||
| 25890 | DNA-binding protein | |||
| 25895 | M | M.Ssp15303ORFEP (100% identity) | M.SenUGA14ORF25895P | |
| 25900 | 284 aa hypothetical protein | |||
| 26730 | IS1 family transposase | |||
| 26735 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.SenUGA14ORF26735P |
| 26740 | R | YpsR1ORFAP (99% identity) | CCWGG | SenUGA14ORF26735P |
| 26745 | resolvase | |||
| 26995 | 55 aa hypothetical protein | |||
| 25055 | M | M.YpsF1ORFCP (100% identity) | M.SenUGA14ORF25055P | |
| 25060 | nuclease | |||
| plasmid pUGA14_2 | ||||
| 27515 | 89 aa hypothetical protein | |||
| 27520 | M | M.StyUK1ORFAP (100% identity) | M.SenUGA14ORF27520P | |
| 27525 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2235 | MFS transporter | |||
| 2240 | M | M.StyUK1I (100% identity) | CAGAG | M.SenUGA14ORF2240P |
| 2245 | R | StyUK1IP (99% identity) | CAGAG | SenUGA14ORF2240P |
| 2250 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24660 | type I restriction-modification system | |||
| 24665 | R | StyUK1MrrP (100% identity) | SenUGA14MrrP | |
| 24670 | 95 aa hypothetical protein | |||