Vibrio parahaemolyticus R14 |
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Putative Vibrio parahaemolyticus R14 RM systems
Ref: Kanrar,S. and Dhar,A.K. unpublished
REBASE ref # 27047
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,477,001 bp | CP028141 |
| chromosome 2: | 1,818,040 bp | CP028142 |
| plasmid pVpR14_56Kb: | 55,421 bp | CP028144 |
REBASE acronym: VphR14
Org_num: 28983
All begin C9I78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 12560 | 0 aa hypothetical protein | |||
| 12565 | R | VpaR13ORF12720P (100% identity) | VphR14ORF12605P | |
| 12570 | site-specific DNA-methyltransferase | |||
| ??? | N6-methyltransferase | |||
| 12575 | 94 aa hypothetical protein | |||
| 12580 | 68 aa hypothetical protein | |||
| 12585 | elongation factor Ts | |||
| 12590 | 49 aa hypothetical protein | |||
| 12595 | 36 aa hypothetical protein | |||
| 12600 | 132 aa hypothetical protein | |||
| 12605 | M | M.VpaR13ORF12720P (100% identity) | M.VphR14ORF12605P | |
| 12610 | S | S.VpaR13ORF12720P (100% identity) | S.VphR14ORF12605P | |
| 12615 | 331 aa hypothetical protein | |||
| 14140 | 0 aa hypothetical protein | |||
| 14145 | R | VpaR13ORF14275P (100% identity) | VphR14ORF14160P | |
| 14150 | 428 aa hypothetical protein | |||
| 14155 | multidrug transporter | |||
| 14160 | M | M.VpaS4ORFCP (100% identity) | M.VphR14ORF14160P | |
| 14165 | S | S.VpaS4ORFCP (100% identity) | S.VphR14ORF14160P | |
| 14170 | 331 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1095 | cell division protein DamX | |||
| 1100 | M | M.VphVPD14DamP (100% identity) | GATC | M.VphR14DamP |
| 1105 | ribulose-phosphate 3-epimerase | |||
| 12565 | DEAD/DEAH box helicase | |||
| ??? | M | M.VpaS4ORFDP (100% identity) | M.VphR14ORF12570P | |
| 12575 | 94 aa hypothetical protein | |||
| 14035 | RNA polymerase sigma factor RpoD | |||
| 14045 | M | M.VpaR13ORF14160P (100% identity) | M.VphR14ORF14045P | |
| 14050 | ATP-binding protein | |||
| chromosome 2 | ||||
| 18205 | DUF3944 domain-containing protein | |||
| 18210 | RM | VpaR13ORF24930P (100% identity) | VphR14ORF18210P | |
| 18215 | BREX system P-loop protein BrxC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 15270 | 129 aa hypothetical protein | |||
| 15275 | R | VpaR13ORF15395P (100% identity) | VphR14ORF15280P | |
| 15280 | M | M.Vvu93ORF2530P (100% identity) | M.VphR14ORF15280P | |
| 15285 | 62 aa hypothetical protein | |||
| plasmid pVpR14_56Kb | ||||
| 26270 | mobile mystery protein B | |||
| 25975 | R | VpaR13ORF26075P (100% identity) | VphR14ORF25980P | |
| 25980 | M | M.VpaR13ORF26075P (100% identity) | M.VphR14ORF25980P | |
| 25985 | transcription factor | |||