Escherichia coli WCHEC4533 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli WCHEC4533 RM systems
Ref: Zhang,X. et al. unpublished
REBASE ref # 26362
| Sequence length: | GenBank #: | |
| Chromosome: | 5,099,810 bp | CP028589 |
| plasmid p1_000533: | 92,537 bp | CP028585 |
| plasmid pCTXM15_000533: | 150,853 bp | CP028587 |
| plasmid pNDM4_000533: | 42,856 bp | CP028588 |
REBASE acronym: Eco4533
Org_num: 28611
All begin DBR03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6500 | 65 aa hypothetical protein | |||
| 6505 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Eco4533ORF6510P |
| 6510 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Eco4533ORF6510P |
| 6515 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Eco4533ORF6510P |
| 6520 | AAA family ATPase | |||
| 24020 | restriction endonuclease | |||
| 24025 | R | EcosS1ORF16790P (99% identity) | CCANNNNNNNCTTC | Eco4533ORF24030P |
| 24030 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.Eco4533ORF24030P |
| 24035 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.Eco4533ORF24030P |
| 24040 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3930 | cell division protein DamX | |||
| 3935 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco4533DamP |
| 3940 | ribulose-phosphate 3-epimerase | |||
| 4495 | DUF2556 domain-containing protein | |||
| 4500 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.Eco4533ORF4500P |
| 4505 | DNA-binding transcriptional regulator Fis | |||
| 9695 | recombination protein NinB | |||
| 9700 | M | M.EcoWN4ORF7335P (100% identity) | GATC | M.Eco4533ORF9700P |
| 9705 | NinE family protein | |||
| 11295 | replication endonuclease | |||
| 11300 | M | M.Sbo812ORFEP (100% identity) | M.Eco4533ORF11300P | |
| 11305 | 330 aa hypothetical protein | |||
| 12335 | HD domain-containing protein | |||
| 12340 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.Eco4533DcmP |
| 12345 | V | V.SflSTLE3DcmP (100% identity) | V.Eco4533DcmP | |
| 12350 | drug/metabolite exporter YedA | |||
| plasmid p1_000533 | ||||
| 455 | 226 aa hypothetical protein | |||
| 460 | M | M.Eco96200ORFEP (90% identity) | M.Eco4533ORF460P | |
| 465 | 94 aa hypothetical protein | |||
| plasmid pCTXM15_000533 | ||||
| 1585 | 73 aa hypothetical protein | |||
| 1590 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco4533ORF1590P | |
| 1595 | 0 aa hypothetical protein | |||
| plasmid pNDM4_000533 | ||||
| 1740 | IS66 family transposase | |||
| 1745 | R | YpsR2ORFAP (100% identity) | CCWGG | Eco4533ORF1750P |
| 1750 | M | M.Kpn531ORF1765P (100% identity) | CCWGG | M.Eco4533ORF1750P |
| 1755 | glycosyltransferase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24015 | GTPase | |||
| 24020 | R | EcosS1MrrP (100% identity) | Eco4533MrrP | |
| 24025 | type I restriction-modification system | |||