Escherichia coli J53 |
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Putative Escherichia coli J53 RM systems
Ref: Matsumura,Y. et al. unpublished
REBASE ref # 27147
Complete sequence: 4,682,574 bp
GenBank #: CP028702
REBASE acronym: EcoJ53
Org_num: 28596
All begin DBB46_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1715 | endoribonuclease SymE | |||
| 1720 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoJ53ORF35470P |
| 1725 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoJ53ORF35470P |
| ??? | R | Msa17ORFC2P (100% identity) | AACNNNNNNGTGC | EcoJ53ORF35470P |
| 1735 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 13040 | drug/metabolite exporter YedA | |||
| 13045 | V | V.SflFF64DcmP (100% identity) | V.EcoJ53DcmP | |
| 13050 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoJ53DcmP |
| 13055 | phosphohydrolase | |||
| 20005 | Fis family transcriptional regulator | |||
| 20010 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoJ53ORF20010P |
| 20015 | DUF2556 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1700 | 906 aa hypothetical protein | |||
| 1705 | R | SenHNK130McrCP (100% identity) | EcoJ53McrC2P | |
| 1710 | R | SenHNK130McrBP (100% identity) | EcoJ53McrB2P | |
| 1715 | endoribonuclease SymE | |||
| ??? | type I restriction-modification system deoxyribonuclease | |||
| 1735 | R | SenHNK130MrrP (100% identity) | EcoJ53MrrP | |
| 1740 | GTPase | |||
| 8580 | DNA-invertase from lambdoid prophage e14 | |||
| 8585 | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoJ53McrAP |
| 8590 | isocitrate dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20670 | ribulose-phosphate 3-epimerase | |||
| 20675 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoJ53ORF3880P |
| 20680 | protein DamX | |||