Salmonella enterica subsp. enterica serovar Typhimurium PIR00538 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium PIR00538 RM systems
Ref: Portmann,A.C. et al. Front Microbiol 9, 446 (2018)
REBASE ref # 26390
| Sequence length: | GenBank #: | |
| Chromosome: | 4,870,262 bp | CP025555 |
| plasmid pPIR00538: | 93,832 bp | CP025556 |
REBASE acronym: Sen00538
Org_num: 28805
All begin C0Z08_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21355 | restriction endonuclease | |||
| 21360 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | Sen00538IP |
| 21365 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.Sen00538I |
| 21370 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.Sen00538I |
| 21375 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1870 | SPOR domain-containing protein | |||
| 1875 | M | adenine-specific DNA-methyltransferase | GATC | M.Sen00538DamP |
| 1880 | ribulose-phosphate 3-epimerase | |||
| 2380 | DUF2556 domain-containing protein | |||
| 2385 | M | adenine-specific DNA-methyltransferase | ATGCAT | M.Sen00538III |
| 2390 | Fis family transcriptional regulator | |||
| 9800 | PerC family transcriptional regulator | |||
| 9805 | M | M.StyUK1V (100% identity) | GATC | M.Sen00538ORF9805P |
| 9810 | RusA family crossover junction | |||
| 10050 | phosphohydrolase | |||
| 10055 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.Sen00538DcmP |
| 10060 | V | very short patch repair endonuclease | V.Sen00538DcmP | |
| 10065 | drug/metabolite exporter YedA | |||
| 14435 | DUF550 domain-containing protein | |||
| 14440 | M | M.Sens29958ORF6205P (100% identity) | M.Sen00538ORF14440P | |
| 14445 | 221 aa hypothetical protein | |||
| 21535 | BREX system P-loop protein BrxC | |||
| 21540 | RM | StyUK1IV (100% identity) | GATCAG | Sen00538II |
| 21545 | 363 aa hypothetical protein | |||
| plasmid pPIR00538 | ||||
| 25570 | 62 aa hypothetical protein | |||
| 25575 | M | M.StyUK1ORFAP (100% identity) | M.Sen00538ORF25575P | |
| 25580 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19060 | 33 aa hypothetical protein | |||
| 19065 | R | StyUK1IP (99% identity) | CAGAG | Sen00538ORF19070P |
| 19070 | type III restriction-modification system StyLTI | |||
| 19065 | type III restriction-modification system | |||
| 19070 | M | M.StyUK1I (100% identity) | CAGAG | M.Sen00538IV |
| 19075 | MFS transporter | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 21350 | 95 aa hypothetical protein | |||
| 21355 | R | StyUK1MrrP (100% identity) | Sen00538MrrP | |
| 21360 | type I restriction-modification system | |||