Putative Neisseria gonorrhoeae RM systems
Ref: Pachulec,E. and van der Does,C. PLoS ONE 5 (4), E9962 (2010)
REBASE ref # 11770
Sequence length: | GenBank #: | |
chromosome I: | 2,174,841 bp | LS999565 |
chromosome I: | 2,172,803 bp | LS999566 |
REBASE acronym: Ngo5289
Org_num: 6029
All begin
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
chromosome I | ||||
??? | R | NgoWPIP (100% identity) | GAGNNNNNTAC | Ngo97687ORFBP |
??? | S | S.NgoWSI (100% identity) | GAGNNNNNTAC | S.Ngo97687ORFBP |
??? | M | M.NgoWSI (100% identity) | GAGNNNNNTAC | M.Ngo97687ORFBP |
??? | R | NgoG7944ORFPP (100% identity) | Ngo97687ORFJP | |
??? | S | S1.NgoJH4ORFGP (100% identity) | S1.Ngo97687ORFJP | |
??? | S | S2.NgoG7944ORFPP (100% identity) | GCANNNNNNNNTGC | S2.Ngo97687ORFJP |
??? | M | M.NgoJH7ORFLP (100% identity) | M.Ngo97687ORFJP | |
chromosome I | ||||
??? | R | Ngo97687ORFJP (100% identity) | NgoG7944ORFPP | |
??? | S | S1.NgoJH4ORFGP (100% identity) | S1.NgoG7944ORFPP | |
??? | S | S2.Ngo97687ORFJP (100% identity) | GCANNNNNNNNTGC | S2.NgoG7944ORFPP |
??? | M | M.NgoJH7ORFLP (100% identity) | M.NgoG7944ORFPP | |
??? | R | NgoWPIP (100% identity) | GAGNNNNNTAC | NgoG7944ORFCP |
??? | S | S.NgoWSI (100% identity) | GAGNNNNNTAC | S.NgoG7944ORFCP |
??? | M | M.NgoWSI (100% identity) | GAGNNNNNTAC | M.NgoG7944ORFCP |
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome I | ||||
??? | R | NgoWSORF2276P (100% identity) | GGCC | Ngo97687ORFPP |
??? | M | M.NgoSH240ORFKP (100% identity) | GGCC | M.Ngo97687ORFPP |
??? | R | NgoWFIIP (100% identity) | GGTGA | Ngo97687ORFOP |
??? | M | M1.Ngos1291II (100% identity) | GGTGA | M1.Ngo97687ORFOP |
??? | M | M2.Ngos1291II (100% identity) | GGTGA | M2.Ngo97687ORFOP |
??? | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo97687ORFNP |
??? | R | NgoJH9ORFDP (100% identity) | RGCGCY | Ngo97687ORFNP |
??? | M | M.NgoJH7ORFGP (100% identity) | M.Ngo97687ORFMP | |
??? | R | NgoTFGB2ORF1219P (100% identity) | Ngo97687ORFMP | |
??? | V | V.Ngos1291ORF65P (100% identity) | V.Ngo97687ORFMP | |
??? | R | NgoWPORF778P (100% identity) | GGNNCC | Ngo97687ORFKP |
??? | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo97687ORFKP |
??? | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo97687ORFCP |
??? | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo97687ORFCP |
??? | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.Ngo97687ORFHP |
??? | R | Ngos1291ORF7560P (100% identity) | GCSGC | Ngo97687ORFHP |
??? | H | H.Ngos1291ORF7560P (100% identity) | H.Ngo97687ORFHP | |
??? | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo97687ORFHP |
??? | SAM-dependent DNA methyltransferase | |||
??? | 322 aa hypothetical protein | |||
??? | RM | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | Ngo97687ORFIP |
??? | R | NgoWSORF391P (100% identity) | Ngo97687ORFEP | |
??? | M | M.NgoWSORF391P (100% identity) | M.Ngo97687ORFEP | |
??? | V | V.NgoWSORF391P (100% identity) | V.Ngo97687ORFEP | |
??? | R | Ngos1291ORF260P (100% identity) | CCGCGG | Ngo97687ORFDP |
??? | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.Ngo97687ORFDP |
??? | pseudogene | |||
??? | R | NgoSH240ORFPP (100% identity) | Ngo97687ORFGP | |
??? | M | M.NgoWPORF8P (100% identity) | M.Ngo97687ORFFP | |
??? | restriction endonuclease | |||
chromosome I | ||||
??? | M | M.Ngos1291ORF7560P (100% identity) | GCSGC | M.NgoG7944ORFNP |
??? | R | Ngos1291ORF7560P (100% identity) | GCSGC | NgoG7944ORFNP |
??? | H | H.Ngos1291ORF7560P (100% identity) | H.NgoG7944ORFNP | |
??? | 322 aa hypothetical protein | |||
??? | DEAD/DEAH box helicase | |||
??? | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.NgoG7944ORFOP |
??? | RM | Ngos1291ORF7515P (100% identity) | GACNNNNNTGA | NgoG7944ORFOP |
??? | R | NgoWSORF391P (100% identity) | NgoG7944ORFEP | |
??? | M | M.NgoWSORF391P (100% identity) | M.NgoG7944ORFEP | |
??? | V | V.NgoWSORF391P (100% identity) | V.NgoG7944ORFEP | |
??? | R | Ngos1291ORF260P (100% identity) | CCGCGG | NgoG7944ORFAP |
??? | M | M.Ngos1291ORF260P (100% identity) | CCGCGG | M.NgoG7944ORFAP |
??? | pseudogene | |||
??? | R | NgoSH240ORFPP (100% identity) | NgoG7944ORFMP | |
??? | M | M.NgoWPORF8P (100% identity) | M.NgoG7944ORFLP | |
??? | restriction endonuclease | |||
??? | R | NgoWSORF2276P (100% identity) | GGCC | NgoG7944ORFKP |
??? | M | M.NgoSH240ORFKP (100% identity) | GGCC | M.NgoG7944ORFKP |
??? | R | NgoWFIIP (100% identity) | GGTGA | NgoG7944ORFJP |
??? | M | M1.Ngos1291II (100% identity) | GGTGA | M1.NgoG7944ORFJP |
??? | M | M2.Ngos1291II (100% identity) | GGTGA | M2.NgoG7944ORFJP |
??? | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.NgoG7944ORFIP |
??? | R | NgoJH9ORFDP (100% identity) | RGCGCY | NgoG7944ORFIP |
??? | M | M.NgoJH7ORFGP (100% identity) | M.NgoG7944ORFHP | |
??? | R | NgoTFGB2ORF1219P (100% identity) | NgoG7944ORFHP | |
??? | V | V.Ngos1291ORF65P (100% identity) | V.NgoG7944ORFHP | |
??? | R | NgoWPORF778P (100% identity) | GGNNCC | NgoG7944ORFFP |
??? | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.NgoG7944ORFFP |
??? | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.NgoG7944ORFDP |
??? | R | Ngos1291ORF10080P (100% identity) | GCCGGC | NgoG7944ORFDP |
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
chromosome I | ||||
??? | M | M.NgoWFI (100% identity) | CCACC | M.Ngo97687ORFAP |
??? | R | NgoWPIIP (100% identity) | CCACC | Ngo97687ORFAP |
??? | R | NgoWPORF742P (100% identity) | Ngo97687ORFLP | |
??? | M | M.NgoNCORF1272P (98% identity) | M.Ngo97687ORFLP | |
chromosome I | ||||
??? | M | M.NgoWFI (100% identity) | CCACC | M.NgoG7944ORFBP |
??? | R | NgoWPIIP (100% identity) | CCACC | NgoG7944ORFBP |
??? | R | NgoWPORF742P (100% identity) | NgoG7944ORFGP | |
??? | M | M.Ngo498ORF646P (100% identity) | M.NgoG7944ORFGP |