Ref: Pachulec,E. and van der Does,C. PLoS ONE 5 (4), E9962 (2010)

REBASE ref # 11770

Sequence length:GenBank #:
chromosome I: 2,174,841 bp LS999565
chromosome I: 2,172,803 bp LS999566

REBASE acronym: Ngo5289

Org_num: 6029

 

All begin

Type I
ORF Gene Most similar Specificity Name
 
chromosome I
 
??? R NgoWPIP (100% identity) GAGNNNNNTAC Ngo97687ORFBP
??? S S.NgoWSI (100% identity) GAGNNNNNTAC S.Ngo97687ORFBP
??? M M.NgoWSI (100% identity) GAGNNNNNTAC M.Ngo97687ORFBP
 
??? R type I site-specific deoxyribonuclease, restriction subunit Ngo97687ORFJP
??? S S1.NgoJH4ORFGP (100% identity) S1.Ngo97687ORFJP
??? S S2.NgoG7944ORFPP (100% identity) GCANNNNNNNNTGC S2.Ngo97687ORFJP
??? M M.NgoJH7ORFLP (100% identity) M.Ngo97687ORFJP
 
chromosome I
 
??? R type I site-specific deoxyribonuclease, restriction subunit NgoG7944ORFPP
??? S S1.NgoJH4ORFGP (100% identity) S1.NgoG7944ORFPP
??? S S2.Ngo97687ORFJP (100% identity) GCANNNNNNNNTGC S2.NgoG7944ORFPP
??? M M.NgoJH7ORFLP (100% identity) M.NgoG7944ORFPP
 
??? R NgoWPIP (100% identity) GAGNNNNNTAC NgoG7944ORFCP
??? S S.NgoWSI (100% identity) GAGNNNNNTAC S.NgoG7944ORFCP
??? M M.NgoWSI (100% identity) GAGNNNNNTAC M.NgoG7944ORFCP
Type II
ORF Gene Most similar Specificity Name
 
chromosome I
 
??? R NgoWSORF2276P (100% identity) GGCC Ngo97687ORFPP
??? M M.NgoSH240ORFKP (100% identity) GGCC M.Ngo97687ORFPP
 
??? R NgoWFIIP (100% identity) GGTGA Ngo97687ORFOP
??? M M2.NgoWSIII (100% identity) GGTGA M1.Ngo97687ORFOP
??? M M2.Ngos1291ORF4080P (100% identity) GGTGA M2.Ngo97687ORFOP
 
??? M cytosine DNA methylase M.NgoI RGCGCY M.Ngo97687ORFNP
??? R NgoJH9ORFDP (100% identity) RGCGCY Ngo97687ORFNP
 
??? M M.NgoJH7ORFGP (100% identity) M.Ngo97687ORFMP
??? R NgoTFGB2ORF1219P (100% identity) Ngo97687ORFMP
??? V very short patch repair endonuclease V.Ngo97687ORFMP
 
??? R NgoWPORF778P (100% identity) GGNNCC Ngo97687ORFKP
??? M DNA cytosine methyltransferase GGNNCC M.Ngo97687ORFKP
 
??? M M.NgoWLORF1156P (100% identity) GCCGGC M.Ngo97687ORFCP
??? R NgoWSORF1056P (100% identity) GCCGGC Ngo97687ORFCP
 
??? M cytosine DNA methyltransferase homolog GCSGC M.Ngo97687ORFHP
??? R 4RCT_A Chain A, Crystal Structure Of R-protein Of Ngoavii Restriction Endonuclease GCSGC Ngo97687ORFHP
??? H DEAD/DEAH box helicase H.Ngo97687ORFHP
??? S S.NgoWSORF450P (100% identity) GACNNNNNTGA S.Ngo97687ORFHP
??? SAM-dependent DNA methyltransferase
 
??? 322 aa hypothetical protein
??? RM NgoWSORF450P (100% identity) GACNNNNNTGA Ngo97687ORFIP
 
??? R NgoWSORF391P (100% identity) Ngo97687ORFEP
??? M M.NgoWSORF391P (100% identity) M.Ngo97687ORFEP
??? V very short patch repair endonuclease V.Ngo97687ORFEP
 
??? R NgoWSORF259P (100% identity) CCGCGG Ngo97687ORFDP
??? M M.NgoWSORF259P (100% identity) CCGCGG M.Ngo97687ORFDP
 
??? pseudogene
??? R NgoSH240ORFPP (100% identity) Ngo97687ORFGP
 
??? M M.NgoWPORF8P (100% identity) M.Ngo97687ORFFP
??? restriction endonuclease
 
chromosome I
 
??? M M.NgoWSORF459P (100% identity) GCSGC M.NgoG7944ORFNP
??? R NgoWSORF459P (100% identity) GCSGC NgoG7944ORFNP
??? H H.NgoWSORF459P (100% identity) H.NgoG7944ORFNP
??? 322 aa hypothetical protein
 
??? DEAD/DEAH box helicase
??? S S.NgoWSORF450P (100% identity) GACNNNNNTGA S.NgoG7944ORFOP
??? RM Ngos1291ORF7515P (100% identity) GACNNNNNTGA NgoG7944ORFOP
 
??? R NgoWSORF391P (100% identity) NgoG7944ORFEP
??? M M.NgoWSORF391P (100% identity) M.NgoG7944ORFEP
??? V V.NgoWSORF391P (100% identity) V.NgoG7944ORFEP
 
??? R NgoWSORF259P (100% identity) CCGCGG NgoG7944ORFAP
??? M M.NgoWSORF259P (100% identity) CCGCGG M.NgoG7944ORFAP
 
??? pseudogene
??? R NgoSH240ORFPP (100% identity) NgoG7944ORFMP
 
??? M M.NgoWPORF8P (100% identity) M.NgoG7944ORFLP
??? restriction endonuclease
 
??? R NgoWSORF2276P (100% identity) GGCC NgoG7944ORFKP
??? M M.NgoSH240ORFKP (100% identity) GGCC M.NgoG7944ORFKP
 
??? R NgoWFIIP (100% identity) GGTGA NgoG7944ORFJP
??? M M2.NgoWSIII (100% identity) GGTGA M1.NgoG7944ORFJP
??? M M2.Ngos1291ORF4080P (100% identity) GGTGA M2.NgoG7944ORFJP
 
??? M M.NgoWSORF2052P (100% identity) RGCGCY M.NgoG7944ORFIP
??? R NgoJH9ORFDP (100% identity) RGCGCY NgoG7944ORFIP
 
??? M M.NgoJH7ORFGP (100% identity) M.NgoG7944ORFHP
??? R NgoTFGB2ORF1219P (100% identity) NgoG7944ORFHP
??? V V.NgoWSORF1801P (100% identity) V.NgoG7944ORFHP
 
??? R NgoWPORF778P (100% identity) GGNNCC NgoG7944ORFFP
??? M DNA cytosine methyltransferase GGNNCC M.NgoG7944ORFFP
 
??? M M.NgoWLORF1156P (100% identity) GCCGGC M.NgoG7944ORFDP
??? R NgoWSORF1056P (100% identity) GCCGGC NgoG7944ORFDP
Type III
ORF Gene Most similar Specificity Name
 
chromosome I
 
??? M M.NgoWFI (100% identity) CCACC M.Ngo97687ORFAP
??? R NgoWPIIP (100% identity) CCACC Ngo97687ORFAP
 
??? R NgoWPORF742P (100% identity) Ngo97687ORFLP
??? M M.NgoNCORF1272P (98% identity) M.Ngo97687ORFLP
 
chromosome I
 
??? M M.NgoWFI (100% identity) CCACC M.NgoG7944ORFBP
??? R NgoWPIIP (100% identity) CCACC NgoG7944ORFBP
 
??? R NgoWPORF742P (100% identity) NgoG7944ORFGP
??? M M.Ngo498ORF646P (100% identity) M.NgoG7944ORFGP