Escherichia coli |
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Putative Escherichia coli RM systems
Ref: Smet,A. et al. PLoS ONE 5 (6), E11202 (2010)
REBASE ref # 11948
| Sequence length: | GenBank #: | |
| Chromosome: | 4,459,549 bp | FMKC00000000 (NZ_FMKC00000000) |
| Chromosome: | 4,934,540 bp | FUEI00000000 (NZ_FUEI00000000) |
| chromosome 0: | 5,009,390 bp | LR130532 |
| plasmid pEC_L8: | 118,525 bp | GU371928 |
REBASE acronym: EcoL8
Org_num: 13155
All begin BANRA_, ECK802_, RCEC007_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2622 | endoribonuclease SymE | |||
| 2623 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoK802ORF2624P |
| 2624 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoK802ORF2624P |
| 2625 | R | EcoWF55T2ORF18815P (100% identity) | AACNNNNNNGTGC | EcoK802ORF2624P |
| 2626 | EcoKMrr | |||
| Chromosome | ||||
| 260022 | antitoxin YefM | |||
| 260023 | M | M.SspS13ORF175P (100% identity) | M.EcoRC2ORF260023P | |
| 260024 | S | S.SspS13ORF175P (100% identity) | S.EcoRC2ORF260023P | |
| 260025 | 226 aa hypothetical protein | |||
| 260026 | R | KpnLL83ORF1P (78% identity) | EcoRC2ORF260023P | |
| 260027 | 44 aa conserved hypothetical protein | |||
| chromosome 0 | ||||
| 650 | Toxic protein SymE | |||
| 651 | S | S1.Ssp28760ORF3465P (89% identity) | S1.Eco19ORF653P | |
| 652 | S | S.Ecocq9ORF4140P (54% identity) | S2.Eco19ORF653P | |
| 653 | M | M.Ssp28760ORF3465P (100% identity) | M.Eco19ORF653P | |
| 654 | R | Ssp28760ORF3465P (100% identity) | Eco19ORF653P | |
| 655 | Mrr restriction system protein | |||
| 1964 | 400 aa hypothetical protein | |||
| ??? | M | M.Sma1978ORFBP (99% identity) | ACGNNNNNGTTG | M.Eco19ORF1965P |
| 1967 | 371 aa hypothetical protein | |||
| 1968 | S | S.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | S.Eco19ORF1965P |
| 1969 | 161 aa hypothetical protein | |||
| 1970 | 187 aa hypothetical protein | |||
| 1971 | 82 aa hypothetical protein | |||
| 1972 | 79 aa hypothetical protein | |||
| 1973 | 653 aa hypothetical protein | |||
| ??? | R | Sma1978ORFBP (99% identity) | ACGNNNNNGTTG | Eco19ORF1965P |
| 1977 | 95 aa hypothetical protein | |||
| 2786 | 243 aa hypothetical protein | |||
| 2787 | R | EcoZ063ORF9555P (100% identity) | Eco19ORF2790P | |
| 2788 | 227 aa hypothetical protein | |||
| 2789 | S | S.EcoP27LORF9760P (100% identity) | S.Eco19ORF2790P | |
| 2790 | M | M.Kpn99ORF25615P (100% identity) | M.Eco19ORF2790P | |
| 2791 | transposase (identified by ISEscan | |||
| 4432 | 398 aa hypothetical protein | |||
| ??? | M | M.Sma1978ORFBP (100% identity) | M.Eco19ORF4433P | |
| 4435 | 263 aa hypothetical protein | |||
| 4436 | S | S.Sma1978ORFBP (55% identity) | S1.Eco19ORF4433P | |
| 4437 | S | S.Sma1978ORFBP (41% identity) | S2.Eco19ORF4433P | |
| 4438 | 387 aa hypothetical protein | |||
| 4439 | 461 aa hypothetical protein | |||
| 4440 | 432 aa hypothetical protein | |||
| 4441 | R | Sma1978ORFBP (100% identity) | Eco19ORF4433P | |
| 4442 | 95 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3467 | Hin recombinational enhancer-binding protein | |||
| 3468 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoK802ORF3468P |
| 3469 | 59 aa hypothetical protein | |||
| 2741 | Ribulose-phosphate 3-epimerase | |||
| 2742 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoK802DamP |
| 2743 | cell division protein DamX | |||
| 2103 | inner membrane transporter YedA | |||
| 2104 | V | V.SflFF64DcmP (100% identity) | V.EcoK802DcmP | |
| 2105 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoK802DcmP |
| 2106 | hydrolase | |||
| Chromosome | ||||
| 970007 | ATP-dependent helicase | |||
| 970008 | RM | EcoF467ORF7520P (100% identity) | EcoRC2ORF970008P | |
| 200046 | P21 prophage-derived protein NinB | |||
| 200047 | M | M.Sfl9783ORF5079P (99% identity) | M.EcoRC2ORF200047P | |
| 200048 | Phage antirepressor KilAC domain protein | |||
| 680050 | D-ribulose-5-phosphate 3-epimerase | |||
| 680051 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoRC2DamP |
| 680052 | 428 aa hypothetical protein | |||
| 260048 | 46 aa conserved hypothetical protein | |||
| 260049 | M | M.KpnLL83ORF28P (100% identity) | M.EcoRC2ORF260049P | |
| 260050 | DNA-binding protein, non-specific | |||
| 210092 | 75 aa conserved hypothetical protein | |||
| 210093 | M | M.SflN92ORF14970P (100% identity) | GATC | M.EcoRC2ORF210093P |
| 210094 | replication endonuclease from | |||
| 650138 | global DNA-binding transcriptional dual | |||
| 650139 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoRC2ORF650139P |
| 650140 | 59 aa conserved hypothetical protein; putative | |||
| 400157 | 306 aa conserved hypothetical protein; putative inner | |||
| 400158 | V | V.SsoSE61DcmP (100% identity) | V.EcoRC2DcmP | |
| 400159 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoRC2DcmP |
| 400160 | metal-dependent phosphohydrolase | |||
| chromosome 0 | ||||
| 2841 | inner membrane transporter YedA | |||
| 2842 | V | V.SsoST152DcmP (100% identity) | V.Eco19DcmP | |
| 2843 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco19DcmP |
| 2844 | 231 aa hypothetical protein | |||
| 4172 | DNA-binding protein Fis | |||
| 4173 | M | M.SspS13ORF21055P (100% identity) | ATGCAT | M.Eco19ORF4173P |
| 4174 | 59 aa hypothetical protein | |||
| 4285 | Ribulose-phosphate 3-epimerase | |||
| 4286 | M | DNA adenine methylase | GATC | M.Eco19DamP |
| 4287 | Cell division protein DamX | |||
| plasmid pEC_L8 | ||||
| ??? | YccB | |||
| ??? | M | M.UbapRSB107ORFAP (100% identity) | M.EcoL8ORFAP | |
| ??? | 73 aa unknown | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2618 | 906 aa hypothetical protein | |||
| 2619 | R | SenHNK130McrCP (100% identity) | EcoK802McrCP | |
| ??? | R | EcotolCMcrBP (100% identity) | EcoK802McrBP | |
| 2622 | endoribonuclease SymE | |||
| 2625 | Type-1 restriction enzyme R protein | |||
| 2626 | R | SenHNK130MrrP (100% identity) | EcoK802MrrP | |
| 2627 | GTP-binding protein YjiA | |||
| Chromosome | ||||
| 940003 | transposase (fragment) | |||
| 940004 | R | SflSTLE4McrBP (100% identity) | EcoRC2McrBP | |
| 940005 | R | SflSTLE4McrCP (100% identity) | EcoRC2McrCP | |
| 940006 | Restriction endonuclease | |||
| chromosome 0 | ||||
| 648 | R | Ssp28760McrCP (100% identity) | Eco19McrCP | |
| 649 | R | EcoSTEC346McrBP (100% identity) | Eco19McrBP | |
| 650 | Toxic protein SymE | |||
| 654 | DNA repair helicase RadD | |||
| 655 | R | Ssp28760MrrP (100% identity) | Eco19MrrP | |
| 656 | GTP-binding protein YjiA | |||