Klebsiella pneumoniae DA48896 |
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Putative Klebsiella pneumoniae DA48896 RM systems
Ref: Nahid,F. et al. PLoS ONE 12 (12), e0189438 (2017)
REBASE ref # 26372
| Sequence length: | GenBank #: | |
| Chromosome: | 5,394,870 bp | CP024429 |
| plasmid p48896_1: | 131,243 bp | CP024430 |
| plasmid p48896_2: | 114,815 bp | CP024431 |
| plasmid p48896_3: | 45,291 bp | CP024432 |
| plasmid p48896_4: | 55,118 bp | CP024433 |
REBASE acronym: Kpn48896
Org_num: 28637
All begin BKL84_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3130 | endoribonuclease SymE | |||
| 3135 | S | S.Kpnst65ORF21505P (100% identity) | GAAYNNNNNNNCTGG | S.Kpn48896ORF3140P |
| 3140 | M | M.Ksp4251ORF21690P (100% identity) | GAAYNNNNNNNCTGG | M.Kpn48896ORF3140P |
| 3145 | R | Ksp4251ORF21690P (100% identity) | GAAYNNNNNNNCTGG | Kpn48896ORF3140P |
| 3150 | 322 aa hypothetical protein | |||
| 17405 | ABC transporter | |||
| 17410 | S | S.Sen64034II (100% identity) | AGCNNNNNCTTC | S.Kpn48896ORF17415P |
| 17415 | M | M.Kpnst65ORF25810P (100% identity) | AGCNNNNNCTTC | M.Kpn48896ORF17415P |
| 17420 | 77 aa hypothetical protein | |||
| plasmid p48896_2 | ||||
| 28310 | group II intron reverse transcriptase/maturase | |||
| 28315 | M | M.Sma854ORF28660P (72% identity) | M.Kpn48896ORF28315P | |
| 28320 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16865 | drug/metabolite exporter YedA | |||
| 16870 | V | V.Ksp2N3ORFEP (75% identity) | V.Kpn48896ORF16875P | |
| 16875 | M | M.KpnsBRORF3775P (100% identity) | CCWGG | M.Kpn48896ORF16875P |
| 16880 | phosphohydrolase | |||
| 17085 | RusA family crossover junction | |||
| 17090 | M | M.Kpnst65ORF24645P (100% identity) | M.Kpn48896ORF17090P | |
| 17095 | transcriptional regulator | |||
| 20125 | phage holin, lambda family | |||
| 20130 | M | M1.Kpnst65ORF18060P (100% identity) | M.Kpn48896ORF20130P | |
| 20135 | TrmB family transcriptional regulator | |||
| 20140 | antitermination protein | |||
| 20145 | M | M2.Kpnst65ORF18060P (100% identity) | M.Kpn48896ORF20145P | |
| 20150 | NinG family protein | |||
| 24835 | ribulose-phosphate 3-epimerase | |||
| 24840 | M | M.KspC31DamP (100% identity) | GATC | M.Kpn48896DamP |
| 24845 | cell division protein DamX | |||
| plasmid p48896_1 | ||||
| 27270 | IS1 family transposase | |||
| 27275 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Kpn48896ORF27275P |
| 27280 | R | YpsR1ORFAP (99% identity) | CCWGG | Kpn48896ORF27275P |
| 27285 | resolvase | |||
| 27775 | 73 aa hypothetical protein | |||
| 27780 | M | M.SenST46ORF25580P (100% identity) | M.Kpn48896ORF27780P | |
| 27785 | 59 aa hypothetical protein | |||
| plasmid p48896_3 | ||||
| 28625 | 140 aa hypothetical protein | |||
| 28630 | M | M.EhoEh60ORF24525P (99% identity) | M.Kpn48896ORF28630P | |
| 28635 | 151 aa hypothetical protein | |||
| plasmid p48896_4 | ||||
| 28920 | 75 aa hypothetical protein | |||
| 28925 | M | M.Kpnst65ORF12385P (100% identity) | M.Kpn48896ORF28925P | |
| 28930 | 103 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid p48896_3 | ||||
| 28685 | 94 aa hypothetical protein | |||
| 28690 | M | M2.Sal9ORF10235P (93% identity) | M.Kpn48896ORF28690P | |
| 28695 | R | SenR219ORF25500P (97% identity) | Kpn48896ORF28690P | |
| 28700 | 122 aa hypothetical protein | |||