Roseobacter denitrificans FDAARGOS_309 |
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Putative Roseobacter denitrificans FDAARGOS_309 RM systems
Ref: Kerrigan,L. et al. unpublished
REBASE ref # 26296
Complete sequence: 4,133,061 bp
GenBank #: CP027407
REBASE acronym: Rde309
Org_num: 28789
All begin CEP88_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1225 | integrase | |||
| 1230 | M | M.RdeORF2233P (100% identity) | GGANNNNNNNRTTGY | M.Rde309II |
| 1235 | S | S.RdeORF2233P (100% identity) | GGANNNNNNNRTTGY | S.Rde309II |
| 1240 | R | RdeORF2233P (100% identity) | GGANNNNNNNRTTGY | Rde309IIP |
| 1245 | 456 aa hypothetical protein | |||
| 9495 | 54 aa hypothetical protein | |||
| 9500 | M | M.RdeORF4053P (100% identity) | ACTNNNNNNGCTG | M.Rde309I |
| ??? | S | S.RdeORF4053P (100% identity) | ACTNNNNNNGCTG | S.Rde309I |
| 9510 | R | RdeORF4053P (100% identity) | ACTNNNNNNGCTG | Rde309IP |
| 9515 | 210 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11805 | A/G-specific adenine glycosylase | |||
| 11810 | M | M.RdeORF298P (99% identity) | GANTC | M.Rde309III |
| 11815 | ribonuclease HII | |||
| 14125 | DNA-binding protein | |||
| 14130 | M | M.RspTHAF33DndBP (96% identity) | M.Rde309DndBP | |
| 14135 | DNA phosphorothioation system sulfurtransferase | |||
| 14130 | DNA sulfur modification protein DndB | |||
| 14135 | M | M.MspALG8DndCP (89% identity) | M.Rde309DndCP | |
| 14140 | DNA sulfur modification protein DndD | |||
| 14135 | DNA phosphorothioation system sulfurtransferase | |||
| 14140 | M | M.MspALG8DndDP (85% identity) | M.Rde309DndDP | |
| 14145 | DNA sulfur modification protein DndE | |||
| 14140 | DNA sulfur modification protein DndD | |||
| 14145 | M | M.MspALG8DndEP (93% identity) | M.Rde309DndEP | |
| 14150 | cysteine desulfurase | |||
| 14145 | DNA sulfur modification protein DndE | |||
| 14150 | M | M.MspALG8DndAP (88% identity) | M.Rde309DndAP | |
| 14155 | 666 aa hypothetical protein | |||
| 15425 | modification methylase | |||
| 15430 | M | M.RdeORF1079P (100% identity) | RGATCY | M.Rde309IV |
| 15435 | R | Rel19469ORFAP (73% identity) | RGATCY | Rde309IVP |
| 15440 | elongation factor 4 | |||