Helicobacter pylori 908 |
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Putative Helicobacter pylori 908 RM systems
Ref: Devi,S.H. et al. unpublished
REBASE ref # 12256
Complete sequence: 1,549,666 bp
GenBank #: CP002184
REBASE acronym: Hpy908
Org_num: 6342
All begin hp908_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 453 | Polyphosphate kinase | |||
| 454 | S | S.Hpy2018ORF445P (100% identity) | S.Hpy908ORF455P | |
| 455 | M | M.Hpy2018ORF445P (100% identity) | M.Hpy908ORF455P | |
| ??? | R | HpySP16ORF4340P (92% identity) | Hpy908ORF455P | |
| 458 | 631 aa hypothetical protein | |||
| 860 | Hydroxyethylthiazole kinase | |||
| 861 | R | Hpy2018ORF832P (100% identity) | Hpy908ORF863P | |
| 862 | S | typeI restriction-modification system subunit S | S.Hpy908ORF863P | |
| 863 | M | M.Hpy2018ORF832P (100% identity) | M.Hpy908ORF863P | |
| 864 | Membrane-associated phospholipid phosphatase | |||
| 1520 | cagY like protein | |||
| 1521 | S | S.Hpy2018ORF1469P (100% identity) | S.Hpy908ORF1522P | |
| ??? | M | M.Hpy2018ORF1469P (100% identity) | M.Hpy908ORF1522P | |
| 1524 | R | Hpy2018ORF1469P (100% identity) | Hpy908ORF1522P | |
| 1525 | predicted metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 53 | agmatine deiminase | |||
| 54 | M | M1.Hpy2018ORF55P (100% identity) | CCTC | M1.Hpy908ORF54P |
| 55 | M | M2.Hpy2018ORF55P (100% identity) | CCTC | M2.Hpy908ORF54P |
| 56 | 419 aa hypothetical protein | |||
| 55 | cytosine specific DNA methyltransferase | |||
| 56 | R | Hpy2018ORF58P (100% identity) | CCTTC | Hpy908ORF57P |
| 57 | M | M.Hpy2018ORF58P (100% identity) | CCTTC | M.Hpy908ORF57P |
| 58 | Proline/sodium symporter Propionate/sodium | |||
| 101 | 329 aa hypothetical protein | |||
| 102 | M | M.Hpy2017ORF98P (100% identity) | GATC | M.Hpy908ORF102P |
| 103 | alpha1,2 fucosyltransferase | |||
| 271 | Exodeoxyribonuclease VII large subunit | |||
| 272 | M | M.Hpy2018ORF269P (100% identity) | TCGA | M.Hpy908ORF272P |
| 273 | 29 aa hypothetical protein | |||
| 273 | 29 aa hypothetical protein | |||
| ??? | R | Hpy2018ORF273P (100% identity) | CCGG | Hpy908ORF277P |
| 277 | M | M.HpyG004II (100% identity) | CCGG | M.Hpy908ORF277P |
| 278 | ClpB protein | |||
| 470 | Glutamyl-tRNA synthetase | |||
| ??? | M | M.Hpy2018ORF4611P (100% identity) | ATTAAT | M.Hpy908ORF471P |
| 473 | 282 aa hypothetical protein | |||
| 474 | GTP-binding protein | |||
| 475 | M | M.Hpy2018ORF463P (100% identity) | ACNGT | M.Hpy908ORF475P |
| ??? | R | Hpy2018ORF463P (100% identity) | ACNGT | Hpy908ORF475P |
| ??? | DNA -methyltransferase | |||
| ??? | 207 aa hypothetical protein HMPREF1391_00383 | |||
| ??? | M | M.HpyNCI18ORFUP (98% identity) | ACGT | M.Hpy908ORF478P |
| ??? | R | Hpy2018ORF4651P (100% identity) | ACGT | Hpy908ORF478P |
| 482 | catalase | |||
| 499 | DNA gyrase subunit B | |||
| 500 | M | M.Hpy2018ORF483P (100% identity) | GTAC | M.Hpy908ORF500P |
| 501 | R | Hpy2018ORF483P (100% identity) | GTAC | Hpy908ORF500P |
| 502 | metalloendopeptidase like membrane protein | |||
| 679 | oxidoreductase | |||
| 680 | RM | Hpy2018ORF6581P (99% identity) | Hpy908ORF680P | |
| 681 | 828 aa hypothetical protein | |||
| 695 | Poly saccharide biosynthesis protein | |||
| 696 | M | M.Hpy2018ORF675P (100% identity) | CCNNGG | M.Hpy908ORF696P |
| 697 | 37 aa hypothetical protein | |||
| 698 | R | Hpy2018ORF675P (100% identity) | CCNNGG | Hpy908ORF696P |
| 699 | Acetone carboxylase gamma subunit | |||
| 921 | Flagellar hook protein | |||
| 922 | R | Hpy2018ORF894P (100% identity) | GTNNAC | Hpy908ORF923P |
| 923 | M | M.Hpy2018ORF894P (99% identity) | GTNNAC | M.Hpy908ORF923P |
| 924 | ATP-dependent DNA helicase | |||
| 1077 | Biotin carboxylase of acetyl-CoA carboxylase | |||
| 1078 | M | M.HpyPO06XI (99% identity) | TCNNGA | M.Hpy908ORF1078P |
| 1079 | R | HpyK262ORF6170P (100% identity) | TCNNGA | Hpy908ORF1078P |
| 1080 | 201 aa hypothetical protein | |||
| 1116 | 144 aa hypothetical protein | |||
| 1117 | M | M.Hpy2018ORF1078P (100% identity) | GCGC | M.Hpy908ORF1117P |
| 1118 | FlgM protein | |||
| 1209 | Haloacid dehalogenase | |||
| 1210 | M | M.Hpy2018ORF1170P (100% identity) | CATG | M.Hpy908ORF1210P |
| 1211 | Serine acetyl transferase | |||
| 1353 | Carboxy terminal protease | |||
| 1354 | R | Hpy2018ORF1315P (100% identity) | GANTC | Hpy908ORF1355P |
| 1355 | M | M.Hpy2018ORF1315P (100% identity) | GANTC | M.Hpy908ORF1355P |
| 1356 | adenine specific DNA methyl transferase | |||
| 1355 | adenine specific DNA methyltransferase | |||
| ??? | RM | Hpy2018ORF1318P (99% identity) | Hpy908ORF1358P | |
| 1359 | Quinolinate phosphoribosyl transferase | |||
| 1399 | lipopolysaccharide biosynthesis protein | |||
| 1400 | M | M.HpyU420VI (100% identity) | GAATTC | M.Hpy908ORF1400P |
| 1401 | R | HpyU420VIP (100% identity) | GAATTC | Hpy908ORF1400P |
| 1402 | UDP-N-acetyl enol pyruvoyl glucosamine | |||
| 1452 | DNA polymerase I | |||
| 1453 | S | S.Hpy2018ORF14081P (43% identity) | S.Hpy908ORF1456P | |
| 1454 | type II S restriction enzyme R protein | |||
| ??? | RM | Hpy2018ORF14081P (99% identity) | Hpy908ORF1456P | |
| 1457 | 185 aa hypothetical protein | |||
| 1503 | 44 aa hypothetical protein | |||
| 1504 | RM | Hpy2018ORF1453P (92% identity) | Hpy908ORF1504P | |
| 1505 | type I DNA modification enzyme | |||
| 1545 | 67 aa hypothetical protein | |||
| 1546 | M | M.HpyU105XI (100% identity) | TGCA | M.Hpy908ORF1546P |
| 1547 | R | Hpy2018ORF1490P (100% identity) | TGCA | Hpy908ORF1546P |
| 1548 | elongation factor Ts | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1369 | Two-component system ompR family response | |||
| ??? | M | M2.Hpy2018ORF1332P (100% identity) | M.Hpy908ORF1370P | |
| 1372 | R | Hpy2018ORF1332P (100% identity) | Hpy908ORF1370P | |
| 1373 | Rod shape-determining protein | |||
| 1382 | endonuclease | |||
| 1383 | M | M.Hpy2018ORF1346P (100% identity) | M.Hpy908ORF1383P | |
| ??? | R | Hpy2018ORF1346P (99% identity) | Hpy908ORF1383P | |
| 1386 | Biotin synthase | |||
| 1505 | type I DNA modification enzyme | |||
| 1506 | R | Hpy2018ORF14561P (100% identity) | Hpy908ORF1507P | |
| ??? | M | M.HpyU102ORF6825P (98% identity) | M.Hpy908ORF1507P | |
| 1509 | ATP-dependent DNA helicase | |||