Escherichia coli ABU 83972 |
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Putative Escherichia coli ABU 83972 RM systems
Ref: Zdziarski,J. et al. PLoS Pathog. 6 (8) (2010)
REBASE ref # 12035
Complete sequence: 5,131,397 bp
GenBank #: CP001671
REBASE acronym: EcoABU
Org_num: 6338
All begin ECABU_c
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 49770 | LexA regulated, possible SOS response | |||
| 49780 | S | S.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | S.EcoABUORF49790P |
| 49790 | M | M.EcoUTI89II (100% identity) | GAGNNNNNNNGTCA | M.EcoABUORF49790P |
| 49800 | R | EcoUTI89IIP (100% identity) | GAGNNNNNNNGTCA | EcoABUORF49790P |
| 49810 | 550 aa conserved hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 11630 | 65 aa hypothetical protein encoded by prophage | |||
| 11640 | M | M.SflC32ORFBP (100% identity) | M.EcoABUORF11640P | |
| 11650 | 143 aa hypothetical protein encoded by prophage | |||
| 13780 | NinB protein encoded within prophage | |||
| 13790 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoABUORF13790P |
| 13800 | protein NinX of prophage | |||
| 18230 | 62 aa conserved hypothetical phage-related protein | |||
| 18240 | M | M.EcoR50ORF11630P (100% identity) | M.EcoABUORF18240P | |
| 18250 | 71 aa hypothetical protein encoded by prophage | |||
| 22190 | carboxylate/amino acid/amine transporter | |||
| 22200 | V | V.EcosC25DcmP (100% identity) | V.EcoABUDcmP | |
| 22210 | M | M.SflC32DcmP (100% identity) | CCWGG | M.EcoABUDcmP |
| 22220 | hydrolase | |||
| 36780 | DNA-binding protein Fis | |||
| 36790 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoABUORF36790P |
| 36800 | membrane protein | |||
| 38040 | D-ribulose-5-phosphate 3-epimerase | |||
| 38050 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoABUDamP |
| 38060 | membrane protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 49380 | phage integrase family protein | |||
| 49390 | R | EcoUTI89IP (100% identity) | CACAG | EcoABUORF49400P |
| 49400 | M | M.EcoUTI89I (100% identity) | CACAG | M.EcoABUORF49400P |
| 49410 | 114 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 49750 | transposase YhgA-like protein | |||
| 49760 | R | EcoUTI89GmrSDP (100% identity) | EcoABUGmrSDP | |
| 49770 | LexA regulated, possible SOS response | |||