Helicobacter pylori 7.13_D1b |
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Putative Helicobacter pylori 7.13_D1b RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,080 bp
GenBank #: CP024016
REBASE acronym: HpyD1b
Org_num: 27779
All begin BXP09_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 500 | formyltetrahydrofolate deformylase | |||
| 505 | S | S.HpyR3cORF510P (100% identity) | S.HpyD1bORF505P | |
| 510 | nickel transporter | |||
| 4770 | 0 aa hypothetical protein | |||
| 4775 | S | S.HpyR3cORF4785P (100% identity) | S.HpyD1bORF4775P | |
| 4780 | cadmium-translocating P-type ATPase | |||
| 5055 | hydroxyethylthiazole kinase | |||
| 5060 | R | HpyR3cORF5080P (100% identity) | HpyD1bORF5070P | |
| 5065 | S | S.HpyR3cORF5080P (100% identity) | S.HpyD1bORF5070P | |
| 5070 | M | M.HpyR3cORF5080P (100% identity) | M.HpyD1bORF5070P | |
| 5075 | DNA (cytosine-5-)-methyltransferase | |||
| 5345 | DUF115 domain-containing protein | |||
| 5350 | R | HpyD1cORF5360P (100% identity) | HpyD1bORF5355P | |
| 5355 | M | M.HpyR3cORF5365P (100% identity) | M.HpyD1bORF5355P | |
| ??? | S | S.HpyR3cORF5365P (100% identity) | S.HpyD1bORF5355P | |
| 5370 | RNA degradosome polyphosphate kinase | |||
| 8135 | M48 family peptidase | |||
| 8140 | R | HpyR3cORF8160P (100% identity) | HpyD1bORF8145P | |
| 8145 | M | M.HpyR3cORF8160P (100% identity) | M.HpyD1bORF8145P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyD1bORF8145P | |
| 8160 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | DEAD/DEAH box helicase | |||
| 55 | RM | HpyR3cORF55P (100% identity) | HpyD1bORF55P | |
| 60 | DUF4065 domain-containing protein | |||
| 135 | outer membrane protein | |||
| 140 | R | HpyR3cORF145P (100% identity) | CCATC | HpyD1bORF145P |
| 145 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M1.HpyD1bORF145P |
| 150 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M2.HpyD1bORF145P |
| 155 | YjgP/YjgQ family permease | |||
| 280 | ComF family protein | |||
| 285 | RM | HpyR3cORF285P (100% identity) | HpyD1bORF285P | |
| ??? | S | S.HpyR3cORF285P (100% identity) | S.HpyD1bORF285P | |
| 300 | DNA polymerase I | |||
| 1305 | serine acetyltransferase | |||
| ??? | R | HpyR3cORF1320P (100% identity) | CATG | HpyD1bORF1315P |
| 1315 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyD1bORF1315P |
| 1320 | HAD family hydrolase | |||
| 1495 | purine-nucleoside phosphorylase | |||
| 1500 | R | HpyU408XP (100% identity) | TCNGA | HpyD1bORF1505P |
| 1505 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyD1bORF1505P |
| 1510 | 69 aa hypothetical protein | |||
| 1790 | flagellar biosynthesis protein FlgM | |||
| 1795 | M | M.HpyR3cORF1800P (99% identity) | M.HpyD1bORF1795P | |
| 1800 | hypothetical protein | |||
| 1980 | Laminin subunit alpha-2 precursor | |||
| 1985 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyD1bORF1990P |
| 1990 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyD1bORF1990P |
| 1995 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3070 | ATP-dependent helicase | |||
| 3075 | M | M.HpyR3cORF3080P (100% identity) | GTNNAC | M.HpyD1bORF3075P |
| 3080 | R | HpyU437IXP (100% identity) | GTNNAC | HpyD1bORF3075P |
| 3085 | flagellar hook protein FlgE | |||
| 3300 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3305 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyD1bORF3305P |
| 3310 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyD1bORF3305P |
| 3315 | M23 family peptidase | |||
| 4160 | (Fe-S)-binding protein | |||
| 4165 | RM | HpyR3cORF4175P (100% identity) | HpyD1bORF4165P | |
| 4170 | 0 aa hypothetical protein | |||
| 5070 | type I restriction-modification system subunit | |||
| 5075 | M | M.HpyR3cORF5085P (100% identity) | M.HpyD1bORF5075P | |
| 5080 | R | HpyR3cORF5085P (100% identity) | HpyD1bORF5075P | |
| 5085 | phosphatase PAP2 family protein | |||
| 5240 | hypothetical protein | |||
| 5245 | R | HpyR3cORF5260P (100% identity) | ACGT | HpyD1bORF5250P |
| 5250 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyD1bORF5250P |
| 5255 | restriction endonuclease | |||
| 5250 | DNA (cytosine-5-)-methyltransferase | |||
| 5255 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyD1bORF5260P |
| 5260 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyD1bORF5260P |
| 5265 | translational GTPase TypA | |||
| 5270 | glycosyltransferase 9 family protein | |||
| 5275 | M | M.HpyU423II (100% identity) | ATTAAT | M.HpyD1bORF5275P |
| 5280 | outer membrane beta-barrel protein | |||
| 6205 | ATP-dependent chaperone ClpB | |||
| 6210 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyD1bORF6210P |
| 6215 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyD1bORF6210P |
| 6220 | hypothetical protein | |||
| 6220 | hypothetical protein | |||
| 6225 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyD1bORF6225P |
| 6230 | exodeoxyribonuclease VII large subunit | |||
| 7050 | alpha-1,2-fucosyltransferase | |||
| ??? | M | M.HpyR3cORF7075P (100% identity) | M.HpyD1bORF7055P | |
| 7070 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7260 | restriction endonuclease | |||
| 7265 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyD1bORF7270P |
| 7270 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyD1bORF7270P |
| 7275 | restriction endonuclease | |||
| 7270 | restriction endonuclease | |||
| 7275 | R | HpyR3cORF7300P (100% identity) | CCTC | HpyD1bORF7280P |
| 7280 | DNA (cytosine-5-)-methyltransferase | |||
| 7285 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.HpyD1bORF7280P |
| 7290 | agmatine deiminase | |||
| 7290 | agmatine deiminase | |||
| 7295 | RM | HpyR3cORF7315P (100% identity) | HpyD1bORF7295P | |
| 7300 | nicotinate-nucleotide diphosphorylase | |||
| 7500 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7505 | M | M.HpySP107ORF6775P (86% identity) | M.HpyD1bORF7505P | |
| 7510 | site-specific DNA-methyltransferase | |||
| 8045 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyD1bORF8055P |
| 8055 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyD1bORF8055P |
| 8060 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 40 | ATP-dependent DNA helicase RecG | |||
| 45 | M | M.HpyR3cORF45P (100% identity) | M.HpyD1bORF45P | |
| 50 | R | HpyR3cORF45P (100% identity) | HpyD1bORF45P | |
| 55 | restriction endonuclease | |||
| 7350 | DNA-binding response regulator | |||
| 7355 | M | M.HpyR3cORF7375P (100% identity) | M.HpyD1bORF7355P | |
| 7360 | R | HpyR3cORF7375P (100% identity) | HpyD1bORF7355P | |
| 7365 | rod shape-determining protein MreC | |||
| 7415 | DNA/RNA non-specific endonuclease | |||
| 7420 | M | M.HpyR3cORF7440P (100% identity) | M.HpyD1bORF7420P | |
| 7425 | R | HpyR3cORF7440P (100% identity) | HpyD1bORF7420P | |
| 7430 | biotin synthase | |||