Helicobacter pylori B128_3 |
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Putative Helicobacter pylori B128_3 RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,070 bp
GenBank #: CP027021
REBASE acronym: HpyB1283
Org_num: 27707
All begin BXP17_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 490 | formyltetrahydrofolate deformylase | |||
| 495 | S | S.HpyR3cORF510P (100% identity) | S.HpyB1283ORF495P | |
| 500 | nickel transporter | |||
| 4770 | outer membrane beta-barrel protein HofF | |||
| 4775 | S | S.HpyR3cORF4785P (100% identity) | S.HpyB1283ORF4775P | |
| 4780 | cadmium-translocating P-type ATPase | |||
| 5055 | hydroxyethylthiazole kinase | |||
| 5060 | R | HpyR3cORF5080P (100% identity) | HpyB1283ORF5070P | |
| 5065 | S | S.HpyR3cORF5080P (100% identity) | S.HpyB1283ORF5070P | |
| 5070 | M | M.HpyR3cORF5080P (100% identity) | M.HpyB1283ORF5070P | |
| 5075 | type I restriction endonuclease | |||
| 5350 | DUF115 domain-containing protein | |||
| 5355 | R | HpyD1cORF5360P (100% identity) | HpyB1283ORF5360P | |
| 5360 | M | M.HpyR3cORF5365P (100% identity) | M.HpyB1283ORF5360P | |
| ??? | S | S.HpyR3cORF5365P (100% identity) | S.HpyB1283ORF5360P | |
| 5375 | RNA degradosome polyphosphate kinase | |||
| 8145 | M48 family peptidase | |||
| 8150 | R | HpyR3cORF8160P (100% identity) | HpyB1283ORF8155P | |
| 8155 | M | M.HpyR3cORF8160P (100% identity) | M.HpyB1283ORF8155P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyB1283ORF8155P | |
| 8170 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | DEAD/DEAH box helicase | |||
| 50 | RM | HpyR3cORF55P (100% identity) | HpyB1283ORF50P | |
| 55 | DUF4065 domain-containing protein | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyR3cORF145P (100% identity) | CCATC | HpyB1283ORF140P |
| 140 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M2.HpyB1283ORF140P |
| 145 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M1.HpyB1283ORF140P |
| 150 | YjgP/YjgQ family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyR3cORF285P (100% identity) | HpyB1283ORF280P | |
| 285 | S | S.HpyR3cORF285P (51% identity) | S1.HpyB1283ORF280P | |
| 290 | S | S2.HpyB128KORF280P (100% identity) | S2.HpyB1283ORF280P | |
| 295 | DNA polymerase I | |||
| 1300 | serine acetyltransferase | |||
| ??? | R | HpyB8ORF281P (100% identity) | CATG | HpyB1283ORF1315P |
| 1315 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyB1283ORF1315P |
| 1320 | HAD family hydrolase | |||
| 1495 | purine-nucleoside phosphorylase | |||
| 1500 | R | HpyU408XP (100% identity) | TCNGA | HpyB1283ORF1505P |
| 1505 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyB1283ORF1505P |
| 1510 | 640 aa hypothetical protein | |||
| 1795 | flagellar biosynthesis protein FlgM | |||
| 1800 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyB1283ORF1800P |
| 1805 | 144 aa hypothetical protein | |||
| 1995 | Laminin subunit alpha-2 precursor | |||
| 2000 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyB1283ORF2005P |
| 2005 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyB1283ORF2005P |
| 2010 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3075 | ATP-dependent helicase | |||
| 3080 | M | M.HpyB128KORF6730P (100% identity) | GTNNAC | M.HpyB1283ORF3080P |
| 3085 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB1283ORF3080P |
| 3090 | flagellar hook protein FlgE | |||
| 3305 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3310 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyB1283ORF3310P |
| 3315 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyB1283ORF3310P |
| 3320 | M23 family peptidase | |||
| 4165 | (Fe-S)-binding protein | |||
| 4170 | RM | HpyB1282ORF4165P (100% identity) | HpyB1283ORF4170P | |
| 4175 | 0 aa hypothetical protein | |||
| 5075 | type I restriction endonuclease | |||
| 5080 | M | M.HpyR3cORF5085P (100% identity) | M.HpyB1283ORF5080P | |
| 5085 | R | HpyR3cORF5085P (100% identity) | HpyB1283ORF5080P | |
| 5090 | phosphatase PAP2 family protein | |||
| 5245 | hypothetical protein | |||
| 5250 | R | HpyR3cORF5260P (100% identity) | ACGT | HpyB1283ORF5255P |
| 5255 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyB1283ORF5255P |
| 5260 | restriction endonuclease | |||
| 5255 | DNA (cytosine-5-)-methyltransferase | |||
| 5260 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyB1283ORF5265P |
| 5265 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyB1283ORF5265P |
| 5270 | translational GTPase TypA | |||
| 5275 | lipopolysaccharide heptosyltransferase family | |||
| 5280 | M | M.HpySP702ORF3885P (97% identity) | ATTAAT | M.HpyB1283ORF5280P |
| 5285 | outer membrane beta-barrel protein | |||
| 6220 | ATP-dependent chaperone ClpB | |||
| 6225 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyB1283ORF6225P |
| 6230 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyB1283ORF6225P |
| 6235 | hypothetical protein | |||
| 6235 | hypothetical protein | |||
| 6240 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyB1283ORF6240P |
| 6245 | exodeoxyribonuclease VII large subunit | |||
| 7070 | alpha-1,2-fucosyltransferase | |||
| ??? | M | M.HpyR3cORF7075P (100% identity) | M.HpyB1283ORF7075P | |
| 7090 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7285 | DNA cytosine methyltransferase | |||
| 7290 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyB1283ORF7295P |
| 7295 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyB1283ORF7295P |
| 7300 | restriction endonuclease | |||
| 7295 | restriction endonuclease | |||
| 7300 | R | restriction endonuclease | CCTC | HpyB1283ORF7305P |
| 7305 | DNA (cytosine-5-)-methyltransferase | |||
| 7310 | M | site-specific DNA-methyltransferase | CCTC | M2.HpyB1283ORF7305P |
| 7315 | agmatine deiminase | |||
| 7315 | agmatine deiminase | |||
| 7320 | RM | HpyR3cORF7315P (100% identity) | HpyB1283ORF7320P | |
| 7325 | nicotinate-nucleotide diphosphorylase | |||
| 7520 | glycosyltransferase family 8 protein | |||
| 7525 | M | M.HpyB8ORF1574P (100% identity) | M.HpyB1283ORF7525P | |
| 7530 | site-specific DNA-methyltransferase | |||
| 8060 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyB1283ORF8070P |
| 8070 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyB1283ORF8070P |
| 8075 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyB128ORF79P (100% identity) | M.HpyB1283ORF40P | |
| 45 | R | HpyR3cORF45P (100% identity) | HpyB1283ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 7375 | DNA-binding response regulator | |||
| 7380 | M | M.HpyR3cORF7375P (100% identity) | M.HpyB1283ORF7380P | |
| 7385 | R | HpyR3cORF7375P (100% identity) | HpyB1283ORF7380P | |
| 7390 | rod shape-determining protein MreC | |||
| 7440 | DNA/RNA non-specific endonuclease | |||
| 7445 | M | M.HpyR3cORF7440P (100% identity) | M.HpyB1283ORF7445P | |
| 7450 | R | HpyR3cORF7440P (100% identity) | HpyB1283ORF7445P | |
| 7455 | biotin synthase | |||