Helicobacter pylori B128_2 |
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Putative Helicobacter pylori B128_2 RM systems
Ref: Noto,J.M. et al. Gut (2017) In press
REBASE ref # 26198
Complete sequence: 1,674,142 bp
GenBank #: CP027020
REBASE acronym: HpyB1282
Org_num: 27697
All begin BXP12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 490 | formyltetrahydrofolate deformylase | |||
| 495 | S | S.HpyR3cORF510P (100% identity) | S.HpyB1282ORF495P | |
| 500 | nickel transporter | |||
| 4765 | outer membrane beta-barrel protein HofF | |||
| 4770 | S | S.HpyR3cORF4785P (100% identity) | S.HpyB1282ORF4770P | |
| 4775 | cadmium-translocating P-type ATPase | |||
| 5050 | hydroxyethylthiazole kinase | |||
| 5055 | R | HpyR3cORF5080P (100% identity) | HpyB1282ORF5065P | |
| 5060 | S | S.HpyR3cORF5080P (100% identity) | S.HpyB1282ORF5065P | |
| 5065 | M | M.HpyR3cORF5080P (100% identity) | M.HpyB1282ORF5065P | |
| 5070 | type I restriction endonuclease | |||
| 5345 | DUF115 domain-containing protein | |||
| 5350 | R | HpyD1cORF5360P (100% identity) | HpyB1282ORF5355P | |
| 5355 | M | M.HpyR3cORF5365P (100% identity) | M.HpyB1282ORF5355P | |
| ??? | S | S.HpyR3cORF5365P (100% identity) | S.HpyB1282ORF5355P | |
| 5370 | RNA degradosome polyphosphate kinase | |||
| 8150 | M48 family peptidase | |||
| 8155 | R | HpyR3cORF8160P (100% identity) | HpyB1282ORF8160P | |
| 8160 | M | M.HpyR3cORF8160P (100% identity) | M.HpyB1282ORF8160P | |
| ??? | S | S.HpyR3cORF8160P (100% identity) | S.HpyB1282ORF8160P | |
| 8175 | 0 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | DEAD/DEAH box helicase | |||
| 50 | RM | HpyR3cORF55P (100% identity) | HpyB1282ORF50P | |
| 55 | DUF4065 domain-containing protein | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyR3cORF145P (100% identity) | CCATC | HpyB1282ORF140P |
| 140 | M | M1.HpyR3cORF145P (100% identity) | CCATC | M2.HpyB1282ORF140P |
| 145 | M | M2.HpyR3cORF145P (100% identity) | CCATC | M1.HpyB1282ORF140P |
| 150 | YjgP/YjgQ family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyR3cORF285P (100% identity) | HpyB1282ORF280P | |
| 285 | S | S.HpyR3cORF285P (51% identity) | S1.HpyB1282ORF280P | |
| 290 | S | S2.HpyB128KORF280P (100% identity) | S2.HpyB1282ORF280P | |
| 295 | DNA polymerase I | |||
| 1295 | serine acetyltransferase | |||
| ??? | R | HpyB8ORF281P (100% identity) | CATG | HpyB1282ORF1310P |
| 1310 | M | M.HpyR3cORF1320P (100% identity) | CATG | M.HpyB1282ORF1310P |
| 1315 | HAD family hydrolase | |||
| 1490 | purine-nucleoside phosphorylase | |||
| 1495 | R | HpyU408XP (100% identity) | TCNGA | HpyB1282ORF1500P |
| 1500 | M | M.HpyR3cORF1510P (100% identity) | TCNGA | M.HpyB1282ORF1500P |
| 1505 | 640 aa hypothetical protein | |||
| 1790 | flagellar biosynthesis protein FlgM | |||
| 1795 | M | M.HpyR3cORF1800P (100% identity) | GCGC | M.HpyB1282ORF1795P |
| 1800 | 144 aa hypothetical protein | |||
| 1990 | Laminin subunit alpha-2 precursor | |||
| 1995 | R | HpyR3cORF1995P (100% identity) | TCNNGA | HpyB1282ORF2000P |
| 2000 | M | M.HpyR3cORF1995P (100% identity) | TCNNGA | M.HpyB1282ORF2000P |
| 2005 | acetyl-CoA carboxylase biotin carboxylase | |||
| 3070 | ATP-dependent helicase | |||
| 3075 | M | M.HpyB128KORF6730P (100% identity) | GTNNAC | M.HpyB1282ORF3075P |
| 3080 | R | HpyU437IXP (100% identity) | GTNNAC | HpyB1282ORF3075P |
| 3085 | flagellar hook protein FlgE | |||
| 3300 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3305 | M | M.HpyR3cORF3315P (100% identity) | GTAC | M.HpyB1282ORF3305P |
| 3310 | R | HpyR3cORF3315P (100% identity) | GTAC | HpyB1282ORF3305P |
| 3315 | M23 family peptidase | |||
| 4160 | (Fe-S)-binding protein | |||
| 4165 | RM | HpyB1283ORF4170P (100% identity) | HpyB1282ORF4165P | |
| 4170 | 0 aa hypothetical protein | |||
| 5070 | type I restriction endonuclease | |||
| 5075 | M | M.HpyR3cORF5085P (100% identity) | M.HpyB1282ORF5075P | |
| 5080 | R | HpyR3cORF5085P (100% identity) | HpyB1282ORF5075P | |
| 5085 | phosphatase PAP2 family protein | |||
| 5240 | hypothetical protein | |||
| 5245 | R | HpyR3cORF5260P (100% identity) | ACGT | HpyB1282ORF5250P |
| 5250 | M | M.HpyR3cORF5260P (100% identity) | ACGT | M.HpyB1282ORF5250P |
| 5255 | restriction endonuclease | |||
| 5250 | DNA (cytosine-5-)-methyltransferase | |||
| 5255 | R | HpyR3cORF5270P (100% identity) | ACNGT | HpyB1282ORF5260P |
| 5260 | M | M.HpyR3cORF5270P (100% identity) | ACNGT | M.HpyB1282ORF5260P |
| 5265 | translational GTPase TypA | |||
| 5270 | lipopolysaccharide heptosyltransferase family | |||
| 5275 | M | M.HpyU423II (100% identity) | ATTAAT | M.HpyB1282ORF5275P |
| 5280 | outer membrane beta-barrel protein | |||
| 6215 | ATP-dependent chaperone ClpB | |||
| 6220 | M | M.HpyR3cORF6220P (100% identity) | CCGG | M.HpyB1282ORF6220P |
| 6225 | R | HpyR3cORF6220P (100% identity) | CCGG | HpyB1282ORF6220P |
| 6230 | hypothetical protein | |||
| 6230 | hypothetical protein | |||
| 6235 | M | M.HpyR3cORF6235P (100% identity) | TCGA | M.HpyB1282ORF6235P |
| 6240 | exodeoxyribonuclease VII large subunit | |||
| 7070 | alpha-1,2-fucosyltransferase | |||
| ??? | M | M.HpyR3cORF7075P (100% identity) | M.HpyB1282ORF7075P | |
| 7090 | [acyl-carrier-protein] S-malonyltransferase | |||
| 7285 | DNA cytosine methyltransferase | |||
| 7290 | R | HpyR3cORF7290P (100% identity) | GTSAC | HpyB1282ORF7295P |
| 7295 | M | M.HpyR3cORF7290P (100% identity) | GTSAC | M.HpyB1282ORF7295P |
| 7300 | restriction endonuclease | |||
| 7295 | restriction endonuclease | |||
| 7300 | R | HpyR3cORF7300P (100% identity) | CCTC | HpyB1282ORF7305P |
| 7305 | DNA (cytosine-5-)-methyltransferase | |||
| 7310 | M | M2.HpyR3cORF7300P (100% identity) | CCTC | M2.HpyB1282ORF7305P |
| 7315 | agmatine deiminase | |||
| 7320 | DNA methyltransferase | |||
| 7325 | RM | HpyR3cORF7315P (69% identity) | HpyB1282ORF7325P | |
| 7330 | nicotinate-nucleotide diphosphorylase | |||
| 7525 | glycosyltransferase family 8 protein | |||
| 7530 | M | M.HpyB8ORF1574P (100% identity) | M.HpyB1282ORF7530P | |
| 7535 | site-specific DNA-methyltransferase | |||
| 8065 | elongation factor Ts | |||
| ??? | R | HpyR3cORF8070P (100% identity) | TGCA | HpyB1282ORF8075P |
| 8075 | M | M.HpyR3cORF8070P (100% identity) | TGCA | M.HpyB1282ORF8075P |
| 8080 | 68 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyB128ORF79P (100% identity) | M.HpyB1282ORF40P | |
| 45 | R | HpyR3cORF45P (100% identity) | HpyB1282ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 7380 | DNA-binding response regulator | |||
| 7385 | M | M.HpyR3cORF7375P (100% identity) | M.HpyB1282ORF7385P | |
| 7390 | R | HpyR3cORF7375P (100% identity) | HpyB1282ORF7385P | |
| 7395 | rod shape-determining protein MreC | |||
| 7445 | DNA/RNA non-specific endonuclease | |||
| 7450 | M | M.HpyR3cORF7440P (100% identity) | M.HpyB1282ORF7450P | |
| ??? | R | HpyB8ORF1552P (100% identity) | HpyB1282ORF7450P | |
| 7460 | biotin synthase | |||