Escherichia coli HS13-1 |
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Putative Escherichia coli HS13-1 RM systems
Ref: Li,R. et al. unpublished
REBASE ref # 26107
| Sequence length: | GenBank #: | |
| Chromosome: | 5,087,117 bp | CP026491 |
| plasmid pHS13-1-IncHI2: | 264,344 bp | CP026492 |
REBASE acronym: EcoHS131
Org_num: 27434
All begin C3K24_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18800 | endoribonuclease SymE | |||
| 18805 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoHS131ORF18810P |
| 18810 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoHS131ORF18810P |
| 18815 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoHS131ORF18810P |
| 18820 | restriction endonuclease | |||
| 24825 | M48 family peptidase | |||
| 24830 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoHS131ORF24850P |
| 24835 | Appr-1-p processing protein | |||
| 24840 | DUF4433 domain-containing protein | |||
| 24845 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.EcoHS131ORF24850P |
| 24850 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoHS131ORF24850P |
| 24855 | transcription factor | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 210 | TrmB family transcriptional regulator | |||
| 215 | M | M.SboBSORF1444P (100% identity) | A | M.EcoHS131ORF215P |
| 235 | 73 aa hypothetical protein | |||
| 3700 | drug/metabolite exporter YedA | |||
| 3705 | V | V.SflC32DcmP (74% identity) | V.EcoHS131DcmP | |
| 3710 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoHS131DcmP |
| 3715 | phosphohydrolase | |||
| 7985 | pseudogene | |||
| 7990 | R | EcoWATORF2872P (100% identity) | EcoHS131ORF7995P | |
| 7995 | M | M.Sso8033ORF3755P (100% identity) | M.EcoHS131ORF7995P | |
| 8000 | capsid protein | |||
| 8210 | LexA family transcriptional regulator | |||
| 8215 | M | M.EcoSCU484ORF22615P (100% identity) | GATC | M.EcoHS131ORF8215P |
| 8220 | PerC family transcriptional regulator | |||
| 12075 | Fis family transcriptional regulator | |||
| 12080 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoHS131ORF12080P |
| 12085 | DUF2556 domain-containing protein | |||
| 12695 | ribulose-phosphate 3-epimerase | |||
| 12700 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoHS131DamP |
| 12705 | cell division protein DamX | |||
| 22040 | PerC family transcriptional regulator | |||
| 22045 | M | M.EcosEC8ORF20220P (100% identity) | GATC | M.EcoHS131ORF22045P |
| 22050 | LexA family transcriptional regulator | |||
| plasmid pHS13-1-IncHI2 | ||||
| 26695 | nuclease | |||
| 26700 | M | M.YpsF1ORFCP (100% identity) | M.EcoHS131ORF26700P | |
| 26705 | DUF1173 domain-containing protein | |||
| 27410 | 284 aa hypothetical protein | |||
| 27415 | M | M.YpsF1ORFDP (100% identity) | M.EcoHS131ORF27415P | |
| 27420 | DNA-binding protein | |||
| 27520 | 202 aa hypothetical protein | |||
| 27525 | M | M.YpsF1ORFBP (100% identity) | M.EcoHS131ORF27525P | |
| 27530 | 108 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 18815 | type I restriction-modification system | |||
| 18820 | R | EcosS1MrrP (100% identity) | EcoHS131MrrP | |
| 18825 | GTPase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25645 | recombination protein NinB | |||
| 25650 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoHS131ORF25650P |
| 25655 | NinE family protein | |||