Leclercia species LSNIH3 |
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Putative Leclercia species LSNIH3 RM systems
Ref: Weingarten,R.A. et al. MBio (2018) In press
REBASE ref # 26109
| Sequence length: | GenBank #: | |
| Chromosome: | 4,781,217 bp | CP026387 |
| plasmid pKPC-3714: | 50,333 bp | CP026389 |
| plasmid pLEC-2975: | 32,921 bp | CP026388 |
| plasmid pLEC-7c0d: | 330,021 bp | CP026391 |
REBASE acronym: LspNIH3
Org_num: 27404
All begin C3F35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pLEC-2975 | ||||
| 23160 | recombinase family protein | |||
| 23165 | R | EcoDX6ORF24100P (99% identity) | AAGNNNNNNTAYG | LspNIH3IP |
| 23170 | S | S.EcoB185ORFDP (65% identity) | AAGNNNNNNTAYG | S.LspNIH3I |
| 23175 | M | M.EcoCT01ORF4080P (97% identity) | AAGNNNNNNTAYG | M.LspNIH3I |
| 23180 | Tn3-like element Tn5403 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7235 | transcriptional regulator | |||
| 7240 | R | ParYKXORF3315P (89% identity) | LspNIH3ORF7240P | |
| 7245 | 117 aa hypothetical protein | |||
| 13635 | cell division protein DamX | |||
| 13640 | M | M.LadPE29DamP (100% identity) | GATC | M.LspNIH3Dam |
| 13645 | ribulose-phosphate 3-epimerase | |||
| 18660 | ATP-dependent helicase | |||
| 18665 | RM | LadE1ORF15685P (99% identity) | LspNIH3ORF18665P | |
| 18670 | transcriptional regulator | |||
| 20160 | phosphohydrolase | |||
| 20165 | M | M.LadG426DcmP (98% identity) | CCWGG | M.LspNIH3DcmP |
| 20170 | V | V.LadPE29DcmP (100% identity) | V.LspNIH3DcmP | |
| 20175 | drug/metabolite exporter YedA | |||
| plasmid pKPC-3714 | ||||
| 23565 | resolvase | |||
| 23570 | R | YpsR1ORFAP (99% identity) | CCWGG | LspNIH3ORF23575P |
| 23575 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.LspNIH3ORF23575P |
| 23580 | IS1 family transposase | |||
| plasmid pLEC-7c0d | ||||
| 24980 | DNA-binding protein | |||
| 24985 | M | M1.PspNIH2ORF20995P (100% identity) | M.LspNIH3ORF24985P | |
| 24990 | 273 aa hypothetical protein | |||
| 26005 | nuclease | |||
| 26010 | M | M.SenZC055ORF26240P (100% identity) | M.LspNIH3ORF26010P | |
| 26015 | 56 aa hypothetical protein | |||
| 26480 | 102 aa hypothetical protein | |||
| 26485 | M | M.SenZC055ORF24890P (100% identity) | M.LspNIH3ORF26485P | |
| 26490 | 203 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9110 | 94 aa hypothetical protein | |||
| 9115 | R | LadJ656McrB3P (100% identity) | LspNIH3McrBP | |
| 9120 | R | LadJ656McrC3P (100% identity) | LspNIH3McrCP | |
| 9125 | aminobutyraldehyde dehydrogenase | |||