Ref: Weingarten,R.A. et al. MBio (2018) In press

REBASE ref # 26109

Sequence length:GenBank #:
Chromosome: 4,781,217 bp CP026387
plasmid pKPC-3714: 50,333 bp CP026389
plasmid pLEC-2975: 32,921 bp CP026388
plasmid pLEC-7c0d: 330,021 bp CP026391

REBASE acronym: LspNIH3

Org_num: 27404

 

All begin C3F35_

Type I
ORF Gene Most similar Specificity Name
 
plasmid pLEC-2975
 
23160 recombinase family protein
23165 R Sen76210IIP (99% identity) AAGNNNNNNTAYG LspNIH3IP
23170 S S.EcoB185ORFDP (65% identity) AAGNNNNNNTAYG S.LspNIH3I
23175 M M.EcoCT01ORF4080P (97% identity) AAGNNNNNNTAYG M.LspNIH3I
23180 Tn3-like element Tn5403 family transposase
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
7235 transcriptional regulator
7240 R Eho89CZORF4745P (89% identity) LspNIH3ORF7240P
7245 117 aa hypothetical protein
 
13635 cell division protein DamX
13640 M M.LadPE29DamP (100% identity) GATC M.LspNIH3Dam
13645 ribulose-phosphate 3-epimerase
 
18660 ATP-dependent helicase
18665 RM LadE1ORF15685P (99% identity) LspNIH3ORF18665P
18670 transcriptional regulator
 
20160 phosphohydrolase
20165 M M.LadG426DcmP (98% identity) CCWGG M.LspNIH3DcmP
20170 V V.LadPE29DcmP (100% identity) V.LspNIH3DcmP
20175 drug/metabolite exporter YedA
 
plasmid pKPC-3714
 
23565 resolvase
23570 R YpsR1ORFAP (99% identity) CCWGG LspNIH3ORF23575P
23575 M M.YpsR2ORFAP (100% identity) CCWGG M.LspNIH3ORF23575P
23580 IS1 family transposase
 
plasmid pLEC-7c0d
 
24980 DNA-binding protein
24985 M M1.PspNIH2ORF20995P (100% identity) M.LspNIH3ORF24985P
24990 273 aa hypothetical protein
 
26005 nuclease
26010 M M.SenF8025ORFCP (100% identity) M.LspNIH3ORF26010P
26015 56 aa hypothetical protein
 
26480 102 aa hypothetical protein
26485 M M.PspNIH2ORF21355P (100% identity) M.LspNIH3ORF26485P
26490 203 aa hypothetical protein
Type IV
ORF Gene Most similar Specificity Name
 
Chromosome
 
9110 94 aa hypothetical protein
9115 R LadJ656McrB3P (100% identity) LspNIH3McrBP
9120 R LadJ656McrC3P (100% identity) LspNIH3McrCP
9125 aminobutyraldehyde dehydrogenase