Escherichia coli ECONIH5 |
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Putative Escherichia coli ECONIH5 RM systems
Ref: Weingarten,R.A. et al. unpublished
REBASE ref # 26066
| Sequence length: | GenBank #: | |
| Chromosome: | 5,103,533 bp | CP026202 |
| plasmid pECO-109b: | 298,633 bp | CP026208 |
| plasmid pECO-cbb3: | 191,344 bp | CP026206 |
| plasmid pECO-dc1b: | 202,687 bp | CP026207 |
| plasmid unnamed: | 42,693 bp | CP026209 |
REBASE acronym: EcoNIH5
Org_num: 27335
All begin C2U48_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3085 | phage holin, lambda family | |||
| 3090 | M | M.SflLIN17ORF17405P (100% identity) | M.EcoNIH5ORF3090P | |
| 3095 | 67 aa hypothetical protein | |||
| 3130 | LexA family transcriptional regulator | |||
| 3135 | M | M.Sso7924ORF2966P (100% identity) | GATC | M.EcoNIH5ORF3135P |
| 3140 | PerC family transcriptional regulator | |||
| 4390 | NinE family protein | |||
| 4395 | M | M.EcoNIH4ORF5P (100% identity) | GATC | M.EcoNIH5ORF4395P |
| 4400 | recombination protein NinB | |||
| 5730 | replication endonuclease | |||
| 5735 | M | M.SspS13ORF8710P (100% identity) | GATC | M.EcoNIH5ORF5735P |
| 5740 | 75 aa hypothetical protein | |||
| 13275 | nucleoside 2-deoxyribosyltransferase | |||
| 13280 | M | M.EcoCX12ORF22840P (100% identity) | M.EcoNIH5ORF13280P | |
| 13285 | 3-5 exoribonuclease | |||
| 16515 | cell division protein DamX | |||
| 16520 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoNIH5DamP |
| 16525 | ribulose-phosphate 3-epimerase | |||
| 17180 | DUF2556 domain-containing protein | |||
| 17185 | M | M.EcoPO3ORF2605P (100% identity) | ATGCAT | M.EcoNIH5ORF17185P |
| 17190 | Fis family transcriptional regulator | |||
| 21745 | 100 aa hypothetical protein | |||
| 21750 | M | M.Ecl23bORF3115P (99% identity) | M.EcoNIH5ORF21750P | |
| 21755 | 159 aa hypothetical protein | |||
| 21770 | phage regulatory protein/antirepressor Ant | |||
| 21775 | M | M2.Eas1009ORF15025P (98% identity) | M.EcoNIH5ORF21775P | |
| 21780 | GntR family transcriptional regulator | |||
| 24820 | phosphohydrolase | |||
| 24825 | M | M.SflFF59DcmP (100% identity) | CCWGG | M.EcoNIH5DcmP |
| 24830 | V | V.SflFF59DcmP (100% identity) | V.EcoNIH5DcmP | |
| 24835 | EamA family transporter | |||
| plasmid pECO-109b | ||||
| 30925 | 102 aa hypothetical protein | |||
| 30930 | M | M.SenF8025ORFAP (86% identity) | M.EcoNIH5ORF30930P | |
| 30935 | 203 aa hypothetical protein | |||
| 31310 | DNA-binding protein | |||
| 31315 | M | M1.PspNIH2ORF20995P (100% identity) | M.EcoNIH5ORF31315P | |
| 31320 | 273 aa hypothetical protein | |||
| plasmid pECO-cbb3 | ||||
| 28285 | IS1 family transposase | |||
| 28290 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoNIH5ORF28290P |
| 28295 | R | YpsR2ORFAP (100% identity) | CCWGG | EcoNIH5ORF28290P |
| 28300 | 109 aa hypothetical protein | |||
| plasmid pECO-dc1b | ||||
| 29885 | IS21-like element ISAs29 family transposase | |||
| 29890 | M | M.YrupYR1ORFAP (83% identity) | M.EcoNIH5ORF29890P | |
| 29895 | 149 aa hypothetical protein | |||
| 30235 | 100 aa hypothetical protein | |||
| 30240 | M | M.YrupYR1ORFCP (100% identity) | M.EcoNIH5ORF30240P | |
| 30245 | 158 aa hypothetical protein | |||
| plasmid unnamed | ||||
| 32470 | 137 aa hypothetical protein | |||
| 32475 | M | M.KquU41ORF29425P (100% identity) | M.EcoNIH5ORF32475P | |
| 32480 | 140 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9250 | 0 aa hypothetical protein | |||
| 9255 | R | Ecos81ORF18685P (99% identity) | VGACAT | EcoNIH5IIP |
| 9260 | M | M.Eco1361ORF19760P (100% identity) | VGACAT | M.EcoNIH5II |
| 9265 | DUF4391 domain-containing protein | |||
| plasmid unnamed | ||||
| 32405 | 122 aa hypothetical protein | |||
| 32410 | R | Kpn1864ORF29350P (100% identity) | AGACC | EcoNIH5IP |
| 32415 | M | M.Kpn8883II (99% identity) | AGACC | M.EcoNIH5I |
| 32420 | 94 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2910 | isocitrate dehydrogenase | |||
| 2915 | R | EcoMB19ORF20745P (98% identity) | EcoNIH5McrAP | |
| 2920 | DNA-invertase | |||