Citrobacter freundii complex species CFNIH3 |
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Putative Citrobacter freundii complex species CFNIH3 RM systems
Ref: Weingarten,R.A. et al. unpublished
REBASE ref # 26066
Complete sequence: 5,334,524 bp
GenBank #: CP026235
REBASE acronym: CfrNIH3
Org_num: 27330
All begin C2U38_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6615 | 190 aa hypothetical protein | |||
| 6620 | M | M.Lam395I (97% identity) | YTAGNNNNNGGT | M.CfrNIH3II |
| 6625 | S | S.KpnS1311ORF1715P (79% identity) | YTAGNNNNNGGT | S.CfrNIH3II |
| 6630 | R | Yin293ORF19740P (97% identity) | YTAGNNNNNGGT | CfrNIH3IIP |
| 6635 | 621 aa hypothetical protein | |||
| 14615 | metal-dependent hydrolase | |||
| 14620 | R | Csp678ORF13180P (100% identity) | CCAANNNNNNCCT | CfrNIH3IIIP |
| 14625 | cold-shock protein | |||
| 14630 | YecA family protein | |||
| 14635 | S | S.Cbr621ORF19220P (100% identity) | CCAANNNNNNCCT | S.CfrNIH3III |
| 14640 | M | M.Csp678ORF13180P (100% identity) | CCAANNNNNNCCT | M.CfrNIH3III |
| 14645 | 391 aa hypothetical protein | |||
| 19740 | IS3 family transposase | |||
| 19745 | M | M.Kpn89II (100% identity) | GGANNNNNCTC | M.CfrNIH3I |
| 19750 | S | S.Ror24150ORF17255P (100% identity) | GGANNNNNCTC | S.CfrNIH3I |
| 19755 | R | EcoNW114ORF5525P (100% identity) | GGANNNNNCTC | CfrNIH3IP |
| 19760 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1020 | cell division protein DamX | |||
| 1025 | M | M.Eco9067DamP (100% identity) | M.CfrNIH3DamP | |
| 1030 | ribulose-phosphate 3-epimerase | |||
| 1555 | GNAT family N-acetyltransferase | |||
| 1560 | M | M.Cbr621ORF43000P (100% identity) | M.CfrNIH3ORF1560P | |
| 1565 | R | Csp976ORF22390P (100% identity) | CfrNIH3ORF1560P | |
| 1570 | 301 aa hypothetical protein | |||
| 10645 | alpha/beta hydrolase | |||
| 10650 | M | M.PdiESL4ORF7880P (100% identity) | TGGCCA | M.CfrNIH3ORF10650P |
| 10655 | 921 aa hypothetical protein | |||
| 14955 | drug/metabolite exporter YedA | |||
| 14960 | V | V.Eco9067ORF2227P (100% identity) | V.CfrNIH3ORF14965P | |
| 14965 | M | M.CspTSA1ORF9545P (100% identity) | M.CfrNIH3ORF14965P | |
| 14970 | phosphohydrolase | |||
| 17380 | antitermination protein | |||
| 17385 | M | M.Csp944ORF7665P (100% identity) | M.CfrNIH3ORF17385P | |
| 17390 | NinG family protein | |||
| 23350 | site-specific integrase | |||
| 23355 | M | M.Csp976ORF2290P (100% identity) | ATGCAT | M.CfrNIH3ORF23355P |
| 23360 | DUF2556 domain-containing protein | |||
| 24045 | 128 aa hypothetical protein | |||
| 24050 | M | M.Cfr449ORF15360P (99% identity) | M.CfrNIH3ORF24050P | |
| 24055 | TrmB family transcriptional regulator | |||
| 24075 | 128 aa hypothetical protein | |||
| 24080 | M | M1.CfrC06ORF15615P (95% identity) | M.CfrNIH3ORF24080P | |
| 24085 | phage N-6-adenine-methyltransferase | |||
| 24080 | DNA cytosine methyltransferase | |||
| 24085 | M | M2.CfrC05ORF14145P (99% identity) | M.CfrNIH3ORF24085P | |
| 24090 | GntR family transcriptional regulator | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15020 | SpnT protein | |||
| 15025 | M | M.SmaSM39ORF2667P (98% identity) | M.CfrNIH3ORF15025P | |
| 15030 | R | Kqu19001ORF8560P (98% identity) | CfrNIH3ORF15025P | |
| 15035 | shufflon system plasmid conjugative transfer | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2980 | 99 aa hypothetical protein | |||
| 2985 | R | CspC21MrrP (100% identity) | CfrNIH3MrrP | |
| 2990 | 95 aa hypothetical protein | |||