Ref: Weingarten,R.A. et al. unpublished

REBASE ref # 26066

Sequence length:GenBank #:
Chromosome: 4,832,521 bp CP026167
plasmid pKPC-79f0: 58,627 bp CP026169
plasmid pLEC-1cb1: 341,250 bp CP026171

REBASE acronym: LspNIH1

Org_num: 27339

 

All begin C2U54_

Type I
ORF Gene Most similar Specificity Name
 
Chromosome
 
23210 119 aa hypothetical protein
23215 M M.Sma95ORF3770P (100% identity) GTAYNNNNGTG M.LspNIH1I
23220 S S.Sma95ORF3770P (100% identity) GTAYNNNNGTG S.LspNIH1I
23225 R LadG426ORF18140P (99% identity) GTAYNNNNGTG LspNIH1IP
23230 197 aa hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
1210 replication protein
1215 M M.LadE61ORF18315P (74% identity) M.LspNIH1ORF1215P
1220 63 aa hypothetical protein
 
1400 98 aa hypothetical protein
1405 M M.LadE61ORF20595P (88% identity) M.LspNIH1ORF1405P
1410 77 aa hypothetical protein
 
2900 ribulose-phosphate 3-epimerase
2905 M M.LspC189DamP (94% identity) GATC M.LspNIH1DamP
2910 cell division protein DamX
 
7470 360 aa hypothetical protein
7475 R Tod27ORFAP (86% identity) LspNIH1ORF7480P
7480 M M.Eco4502ORFEP (85% identity) M.LspNIH1ORF7480P
7485 V V.Csp593ORF2735P (69% identity) V.LspNIH1ORF7480P
7490 SAM-dependent methyltransferase
 
13840 138 aa hypothetical protein
13845 M M.Kpn55ORF1201P (79% identity) M.LspNIH1ORF13845P
13850 ATP-binding protein
 
15790 85 aa hypothetical protein
15795 M M.LspG3LORF19560P (99% identity) M.LspNIH1ORF15795P
15800 110 aa hypothetical protein
 
19530 drug/metabolite exporter YedA
19535 V V.LspC189DcmP (100% identity) V.LspNIH1DcmP
19540 M M.Lsp6151DcmP (98% identity) CCWGG M.LspNIH1DcmP
19545 phosphohydrolase
 
plasmid pKPC-79f0
 
24300 resolvase
24305 R YpsR1ORFAP (99% identity) CCWGG LspNIH1ORF24310P
24310 M M.YpsR2ORFAP (100% identity) CCWGG M.LspNIH1ORF24310P
24315 IS1 family transposase
 
plasmid pLEC-1cb1
 
25205 273 aa hypothetical protein
25210 M M1.PspNIH2ORF20995P (100% identity) M.LspNIH1ORF25210P
25215 DNA-binding protein
 
25600 203 aa hypothetical protein
25605 M M.PspNIH2ORF21355P (100% identity) M.LspNIH1ORF25605P
25610 102 aa hypothetical protein
 
26390 nuclease
26395 M M.SenF8025ORFCP (100% identity) M.LspNIH1ORF26395P
26400 56 aa hypothetical protein
Type III
ORF Gene Most similar Specificity Name
 
Chromosome
 
21065 94 aa hypothetical protein
21070 M M.CspC18ORF6875P (98% identity) M.LspNIH1ORF21070P
21075 R KpnM1862ORFAP (98% identity) LspNIH1ORF21070P
21080 prepilin-type N-terminal cleavage/methylation
Type IV
ORF Gene Most similar Specificity Name
 
Chromosome
 
7560 aminobutyraldehyde dehydrogenase
7565 R LadI1McrC2P (89% identity) LspNIH1McrCP
7570 R LadZ961McrBP (41% identity) LspNIH1McrBP
7575 IS5-like element ISKpn26 family transposase