Nitrospira defluvii |
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Putative Nitrospira defluvii RM systems
Ref: Lucker,S. et al. Proc. Natl. Acad. Sci. U.S.A. 107 (30), 13479-13484 (2010)
REBASE ref # 11902
Complete sequence: 4,317,083 bp
GenBank #: FP929003 (NC_014355)
REBASE acronym: NdeG
Org_num: 6111
All begin NIDE
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 135 | protein of unknown function | |||
| 136 | R | AxyR8ORF10800P (78% identity) | NdeGORF139P | |
| 137 | S | S.Tmi1762ORF12065P (43% identity) | S.NdeGORF139P | |
| 138 | conserved protein of unknown function, DUF1016 | |||
| 139 | M | M.SbaBA175ORF1393P (77% identity) | M.NdeGORF139P | |
| 140 | conserved protein of unknown function | |||
| 1897 | protein of unknown function | |||
| 1898 | M | M.MbaCM1ORF2882P (80% identity) | M.NdeGORF1898P | |
| 1899 | conserved protein of unknown function, DUF1016 | |||
| 1900 | S | S.Pst25392ORF12125P (55% identity) | S.NdeGORF1898P | |
| 1901 | R | NspKM1ORF6250P (86% identity) | NdeGORF1898P | |
| 1902 | RNA polymerase sigma factor, sigma-70 family | |||
| 2501 | exported protein of unknown function | |||
| 2502 | M | M.TsyCad16ORFJ1P (75% identity) | M.NdeGORF2502P | |
| 2503 | S | S.Pma1ORF1460P (33% identity) | S.NdeGORF2502P | |
| 2504 | conserved protein of unknown function DUF891 | |||
| 2505 | Transcriptional regulator (modular | |||
| 2506 | R | GspOR1ORF4070P (67% identity) | NdeGORF2502P | |
| 2507 | DNA repair protein RadC homolog | |||
| 2621 | protein of unknown function | |||
| 2622 | R | protein of unknown function | NdeGORF2625P | |
| 2623 | conserved protein of unknown function, RhuM | |||
| 2624 | S | S.Ath19377ORFKP (41% identity) | S.NdeGORF2625P | |
| 2625 | M | M.PliMII (86% identity) | M.NdeGORF2625P | |
| 2626 | HTH-type transcriptional regulator | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 91 | protein of unknown function | |||
| 92 | M | M1.Bvi1590ORF15435P (91% identity) | M1.NdeGORF92P | |
| 93 | M | M2.JspUSM3ORF4945P (92% identity) | M2.NdeGORF92P | |
| 94 | conserved protein of unknown function | |||
| 128 | DEAD/DEAH box helicase, SNF2 family | |||
| 129 | M | M.GmoMB1ORFDP (96% identity) | M.NdeGORF129P | |
| 130 | conserved protein of unknown function | |||
| 3669 | exported protein of unknown function | |||
| 3670 | M | M.NspDNFORF149P (73% identity) | CTCGAG | M.NdeGORF3670P |
| 3671 | R | NmoM1ORF1966P (86% identity) | CTCGAG | NdeGORF3670P |
| 3672 | protein of unknown function | |||