Human gut metagenome |
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Putative Human gut metagenome RM systems
Ref: Beaulaurier,J.A. et al. Nat. Biotechnol. (2017) In press
REBASE ref # 25194
GenBank #: PDYI00000000
REBASE acronym: Hgu7
Org_num: 27262
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1 | 80 aa hypothetical protein | |||
| 2 | R | BspZJ18ORF9925P (100% identity) | Hgu7ORFOP | |
| 3 | XRE family transcriptional regulator | |||
| 59 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase | |||
| 61 | M | M.PmeBin22ORFCP (100% identity) | M.Hgu7ORFRP | |
| 64 | S | S.BdoB079ORF1845P (99% identity) | S1.Hgu7ORFRP | |
| 65 | S | S1.Pdo3C03ORF2458P (45% identity) | S2.Hgu7ORFRP | |
| 66 | S | S2.PmeBin22ORFCP (100% identity) | S3.Hgu7ORFRP | |
| ??? | R | Pdo17855ORF1705P (99% identity) | Hgu7ORFRP | |
| 73 | WYL domain-containing protein | |||
| 303 | uncharacterized protein BN496_01499 | |||
| 304 | C | C.Pvu201ORF22395P (100% identity) | C.Hgu7ORFTP | |
| 305 | R | Pdo1ORF14765P (100% identity) | Hgu7ORFTP | |
| 307 | M | M.Pdo3C03ORF2038P (100% identity) | M.Hgu7ORFTP | |
| 310 | 85 aa hypothetical protein | |||
| 481 | 247 aa hypothetical protein | |||
| 483 | C | C.PmeBin57ORFHP (100% identity) | C.Hgu7ORFLP | |
| 485 | R | BdoB079ORF12520P (100% identity) | Hgu7ORFLP | |
| 487 | M | M.Bfr4ORF9055P (100% identity) | M.Hgu7ORFLP | |
| 491 | uncharacterized protein | |||
| 492 | death on curing protein | |||
| 493 | 165 aa hypothetical protein SJDPG12_06030 | |||
| 495 | S | S3.BdoB079ORF12520P (100% identity) | S1.Hgu7ORFLP | |
| 497 | S | S2.BdoB079ORF12520P (100% identity) | S2.Hgu7ORFLP | |
| 498 | S | S2.PmeBin57ORFHP (87% identity) | S3.Hgu7ORFLP | |
| 499 | S | S3.Bfr4ORF9055P (63% identity) | S4.Hgu7ORFLP | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | R | Bbr50IP (31% identity) | CCWGG | Hgu7ORFQP |
| 6 | M | M.BloJRPTORF6565P (100% identity) | CCWGG | M.Hgu7ORFQP |
| 10 | 76 aa hypothetical protein | |||
| 1 | DNA phosphorothioation system sulfurtransferase DndC | |||
| 2 | M | M.Ualbin03DndDP (39% identity) | M.Hgu7DndDP | |
| 4 | DNA sulfur modification protein DndE | |||
| 1 | M | M.Ualbin03DndCP (26% identity) | M.Hgu7DndCP | |
| 2 | DNA sulfur modification protein DndD | |||
| 1 | RM | BunC05ORF112P (40% identity) | Hgu7ORFYP | |
| 2 | M | M.BloNORF564P (40% identity) | M.Hgu7ORFSP | |
| 5 | R | R2.BloLC67ORFCP (100% identity) | Hgu7ORFSP | |
| 6 | 146 aa hypothetical protein | |||
| 2 | 198 aa hypothetical protein AE06_04965 | |||
| 3 | M | M.Sen5773ORF4471P (100% identity) | RCCGGY | M.Hgu7ORFCP |
| 4 | histidine kinase | |||
| 7 | 670 aa hypothetical protein | |||
| 9 | M | M.Bfr317ORF6580P (100% identity) | M.Hgu7ORFAP | |
| 11 | 74 aa hypothetical protein | |||
| 2 | DNA sulfur modification protein DndD | |||
| 4 | M | M.Ualbin03DndEP (70% identity) | M.Hgu7DndEP | |
| 5 | 735 aa hypothetical protein BHV66_08720 | |||
| 9 | DUF5045 domain-containing protein | |||
| 11 | M | M.PvuC06ORF1788P (100% identity) | M.Hgu7ORFDP | |
| 13 | 160 aa hypothetical protein | |||
| 10 | 63 aa hypothetical protein | |||
| 11 | M | M.BdoB010ORF14750P (100% identity) | M.Hgu7ORFEP | |
| 13 | BRO family%2C N-terminal domain | |||
| 64 | 122 aa hypothetical protein C800_01302 | |||
| 67 | C | C.BdoB079IP (100% identity) | C.Hgu7ORFIP | |
| 68 | R | BdoB079IP (100% identity) | TTCGAA | Hgu7ORFIP |
| 70 | M | M.BdoB079I (100% identity) | TTCGAA | M.Hgu7ORFIP |
| 71 | Uncharacterised protein | |||
| 52 | 117 aa hypothetical protein | |||
| 53 | M | M.Pdo3C03ORF2820P (100% identity) | M.Hgu7ORFHP | |
| 54 | R | Pdo3C03ORF2820P (99% identity) | Hgu7ORFHP | |
| 55 | 1412 aa hypothetical protein | |||
| 40 | 283 aa hypothetical protein COA31_19035 | |||
| 41 | R | Bfr317ORF14150P (100% identity) | Hgu7ORFJP | |
| 43 | 70 aa hypothetical protein | |||
| 44 | XRE family transcriptional regulator | |||
| 45 | M | M.Bfr317ORF14150P (100% identity) | M.Hgu7ORFJP | |
| 46 | 87 aa hypothetical protein HMPREF2530_02176 | |||
| 48 | 67 aa hypothetical protein | |||
| 50 | M | M.PmeBin12ORFDP (100% identity) | M.Hgu7ORFBP | |
| 51 | 163 aa hypothetical protein AC094_29800 | |||
| 76 | 78 aa hypothetical protein | |||
| ??? | M | M.BdoB079ORF7060P (100% identity) | M.Hgu7ORFWP | |
| 79 | DUF3846 domain-containing protein | |||
| 70 | 70 aa hypothetical protein | |||
| 71 | M | M.BdoB010ORF12705P (99% identity) | M.Hgu7ORFNP | |
| 75 | nuclease | |||
| 159 | 155 aa hypothetical protein | |||
| 163 | V | V.Pdo1051ORF4310P (100% identity) | V.Hgu7ORFMP | |
| 165 | R | R1.Pdo1051ORF4310P (100% identity) | R1.Hgu7ORFMP | |
| 166 | M | M1.Pdo1051ORF4310P (100% identity) | M1.Hgu7ORFMP | |
| 167 | M | M2.Pdo1051ORF4310P (100% identity) | M2.Hgu7ORFMP | |
| 168 | C | C.Pdo1051ORF4310P (100% identity) | C.Hgu7ORFMP | |
| 169 | R | R2.Pdo1051ORF4310P (100% identity) | R2.Hgu7ORFMP | |
| 170 | 143 aa hypothetical protein HMPREF9441_02351 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2 | bifunctional tRNA pseudouridine synthase/23S rRNA pseudouridine synthase RluA | |||
| 3 | R | Bfr317ORF9575P (100% identity) | Hgu7ORFPP | |
| 7 | M | M.PmeBin12ORFEP (99% identity) | M.Hgu7ORFPP | |
| 9 | DUF5110 domain-containing protein | |||
| 4 | 266 aa hypothetical protein | |||
| 5 | R | Bfr95ORF16310P (100% identity) | Hgu7ORFXP | |
| 6 | M | M.Bfr95ORF16310P (100% identity) | M.Hgu7ORFXP | |
| 7 | C | C.Bfr95ORF16310P (100% identity) | C.Hgu7ORFXP | |
| 9 | 59 aa hypothetical protein | |||