Mixed sample |
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Putative Mixed sample RM systems
Ref: Beaulaurier,J.A. et al. Nat. Biotechnol. (2017) In press
REBASE ref # 25194
GenBank #: PDZQ00000000
REBASE acronym: Msa17
Org_num: 27261
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6 | 125 aa hypothetical protein | |||
| 7 | R | Cae25986ORF5215P (86% identity) | Msa17ORFT1P | |
| 11 | M | M.Caewa7ORFBP (100% identity) | M.Msa17ORFT1P | |
| 14 | S | S2.Cae25986ORF5215P (100% identity) | S.Msa17ORFT1P | |
| 18 | integrase | |||
| 54 | 122 aa hypothetical protein | |||
| 56 | M | M.PmeBin87ORFFP (100% identity) | M.Msa17ORFZP | |
| 58 | 201 aa hypothetical protein | |||
| 59 | S | S.PmeBin87ORFFP (100% identity) | S.Msa17ORFZP | |
| 60 | 259 aa hypothetical protein | |||
| 61 | 67 aa hypothetical protein | |||
| 62 | 65 aa hypothetical protein bolteae] | |||
| 63 | 91 aa hypothetical protein | |||
| 64 | 118 aa hypothetical protein | |||
| 65 | R | PmeBin87ORFFP (100% identity) | Msa17ORFZP | |
| 70 | C | C.PmeBin87ORFFP (100% identity) | C.Msa17ORFZP | |
| 71 | 152 aa hypothetical protein | |||
| 98 | XRE family transcriptional regulator | |||
| 99 | R | Ebo1231ORF14870P (100% identity) | Msa17ORFS1P | |
| 102 | M | M.Ebo1231ORF14870P (100% identity) | M.Msa17ORFS1P | |
| 104 | S | S1.Ebo1231ORF14870P (100% identity) | S1.Msa17ORFS1P | |
| 106 | S | S2.Ebo1231ORF14870P (100% identity) | S2.Msa17ORFS1P | |
| 108 | 67 aa hypothetical protein | |||
| 261 | 504 aa hypothetical protein | |||
| 262 | R | BccORFDP (100% identity) | Msa17ORFF1P | |
| 268 | S | S2.Bca43185aORF2045P (100% identity) | S1.Msa17ORFF1P | |
| 271 | integrase | |||
| 272 | divergent AAA domain protein | |||
| 273 | 109 aa hypothetical protein | |||
| 274 | 136 aa hypothetical protein | |||
| 275 | S | S1.Bca43195FORF18200P (100% identity) | S2.Msa17ORFF1P | |
| 276 | M | M2.Bov179ORF20415P (100% identity) | M2.Msa17ORFF1P | |
| 278 | M | M1.BccORFDP (100% identity) | M1.Msa17ORFF1P | |
| 281 | XRE family transcriptional regulator | |||
| 278 | SAM-dependent DNA methyltransferase | |||
| 281 | C | C.Bth576ORF2630P (100% identity) | C.Msa17ORFG1P | |
| 282 | 60 aa hypothetical protein | |||
| 980 | 134 aa hypothetical protein | |||
| 983 | S | S4.Bca43195FORF1915P (100% identity) | S1.Msa17ORFW1P | |
| 984 | Integrase/recombinase | |||
| 986 | S | S6.BccORFAP (44% identity) | S2.Msa17ORFW1P | |
| 987 | S | S2.Bca43195FORF1915P (100% identity) | S3.Msa17ORFW1P | |
| 988 | S | S1.BccORFAP (100% identity) | S4.Msa17ORFW1P | |
| 989 | M | M.BccORFAP (100% identity) | M.Msa17ORFW1P | |
| 991 | HNH endonuclease | |||
| 992 | R | BccORFAP (100% identity) | Msa17ORFW1P | |
| 997 | C | C.BccORFAP (100% identity) | C.Msa17ORFW1P | |
| 998 | 319 aa hypothetical protein C825_00593 | |||
| 1996 | restriction endonuclease subunit S | |||
| 1998 | R | Cae25986ORF10000P (100% identity) | Msa17ORFG2P | |
| 2004 | S | S3.Cae25986ORF10000P (100% identity) | S1.Msa17ORFG2P | |
| 2007 | 139 aa hypothetical protein | |||
| 2008 | tyrosine-type recombinase/integrase | |||
| 2009 | S | S1.Cae25986ORF10000P (81% identity) | S2.Msa17ORFG2P | |
| 2014 | M | M.Cae25986ORF10000P (100% identity) | M.Msa17ORFG2P | |
| 2022 | GIY-YIG nuclease family protein | |||
| 1164 | uncharacterized protein | |||
| 1170 | S | S.PmeBin13ORFGP (100% identity) | S.Msa17ORFSP | |
| 1172 | M | M.PmeBin13ORFGP (100% identity) | M.Msa17ORFSP | |
| 1173 | 77 aa hypothetical protein | |||
| 1252 | 155 aa hypothetical protein | |||
| 1253 | R | Bov975ORF2541P (100% identity) | Msa17ORFJ1P | |
| 1255 | M | M.BspD2aORF12550P (100% identity) | M.Msa17ORFJ1P | |
| 1256 | S | S1.Bov8483FORF11440P (100% identity) | S1.Msa17ORFJ1P | |
| 1257 | S | S2.Bov1235ORF21635P (91% identity) | S2.Msa17ORFJ1P | |
| 1258 | S | S4.Bov1516ORF20510P (53% identity) | S3.Msa17ORFJ1P | |
| 1259 | S | S1.Bov8483aORF12415P (93% identity) | S4.Msa17ORFJ1P | |
| 1260 | site-specific integrase | |||
| 1518 | ATP/GTP-binding protein | |||
| ??? | M | M1.Msa17ORFWP (99% identity) | M.Msa17ORFUP | |
| 1867 | DUF262 domain-containing protein | |||
| 1868 | R | BthVORF4518P (100% identity) | Msa17ORFY1P | |
| 1871 | M | M.BthVORF4518P (100% identity) | M.Msa17ORFY1P | |
| 1874 | S | S2.BthVORF4518P (100% identity) | S1.Msa17ORFY1P | |
| 1875 | S | S3.BthVORF4518P (83% identity) | S2.Msa17ORFY1P | |
| 1877 | S | S4.BthVORF4518P (100% identity) | S3.Msa17ORFY1P | |
| 1879 | type I restriction endonuclease EcoR124II | |||
| 1901 | XRE family transcriptional regulator | |||
| 1902 | R | BthVORF4538P (100% identity) | Msa17ORFB2P | |
| 1906 | 307 aa hypothetical protein | |||
| 1907 | 567 aa hypothetical protein CR159_21190 | |||
| 1908 | M | M.BthVORF4538P (100% identity) | M.Msa17ORFB2P | |
| 1911 | toxin-antitoxin system toxin component Fic family | |||
| 1913 | S | S.BthVORF4538AP (99% identity) | S1.Msa17ORFB2P | |
| 1915 | S | S.BthVORF4538BP (100% identity) | S2.Msa17ORFB2P | |
| 1916 | S | S.BthVORF4538CP (100% identity) | S3.Msa17ORFB2P | |
| 1918 | S | S.BthVORF4538DP (100% identity) | S4.Msa17ORFB2P | |
| 1919 | site-specific recombinase phage integrase family | |||
| 3361 | methylated adenine and cytosine restriction protein | |||
| 3362 | R | EcotolCORF4050P (100% identity) | AACNNNNNNGTGC | Msa17ORFC2P |
| 3370 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Msa17ORFC2P |
| 3374 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.Msa17ORFC2P |
| 3375 | 114 aa hypothetical protein | |||
| 2922 | DUF262 domain-containing protein | |||
| 2923 | R | BccORFFP (100% identity) | Msa17ORFWP | |
| 2924 | S | S2.Bov8483aORF21285P (94% identity) | S1.Msa17ORFWP | |
| 2927 | integrase | |||
| 2928 | S | S1.Bun901ORF13185P (100% identity) | S2.Msa17ORFWP | |
| ??? | M | M2.Bun901ORF13185P (80% identity) | M2.Msa17ORFWP | |
| 2934 | M | M1.Bun901ORF13185P (100% identity) | M1.Msa17ORFWP | |
| 2935 | ATP/GTP-binding protein | |||
| 3970 | ATP-dependent RecD-like DNA helicase | |||
| 3974 | R | Pvu1098ORF11445P (100% identity) | Msa17ORFX1P | |
| 3977 | DUF262 domain-containing protein | |||
| 3978 | 114 aa hypothetical protein | |||
| 3979 | S | S.Pvu1098ORF11445P (100% identity) | S.Msa17ORFX1P | |
| 3980 | M | M.Pvu1098ORF11445P (100% identity) | M.Msa17ORFX1P | |
| 3982 | 128 aa hypothetical protein | |||
| 3983 | C | C.Bvu8492ORF9340P (100% identity) | C.Msa17ORFX1P | |
| 3986 | 86 aa hypothetical protein | |||
| 6864 | 382 aa hypothetical protein | |||
| 6865 | S | S2.Cae25986ORF5215P (100% identity) | S.Msa17ORFT1P | |
| 6868 | M | M.Caewa7ORFBP (100% identity) | M.Msa17ORFT1P | |
| 6873 | R | Cae25986ORF5215P (86% identity) | Msa17ORFT1P | |
| 6877 | 121 aa hypothetical protein | |||
| 4659 | 108 aa hypothetical protein | |||
| 4660 | S | S5.Pvu1098ORF10145P (94% identity) | S1.Msa17ORFA2P | |
| 4661 | IS66 family insertion sequence hypothetical protein | |||
| 4662 | 63 aa hypothetical protein | |||
| 4663 | IS66 Orf2 like protein | |||
| 4664 | IS66 family transposase | |||
| 4665 | 150 aa hypothetical protein | |||
| 4666 | 104 aa hypothetical protein | |||
| 4667 | S | S4.Bvu8492ORF2385P (100% identity) | S2.Msa17ORFA2P | |
| 4668 | S | S2.BcaH1617ORFCP (90% identity) | S3.Msa17ORFA2P | |
| 4670 | S | S4.Bvu8482ORF3687P (96% identity) | S4.Msa17ORFA2P | |
| 4672 | S | S1.Bvu8492ORF2385P (100% identity) | S5.Msa17ORFA2P | |
| 4673 | toxin-antitoxin system toxin component Fic family | |||
| 4674 | 102 aa hypothetical protein | |||
| 4676 | M | M1.Pvu1098ORF10145P (100% identity) | M.Msa17ORFA2P | |
| 4677 | R | Pvu1098ORF10145P (100% identity) | Msa17ORFA2P | |
| 4680 | C | C.Pvu1098ORF10145P (100% identity) | C.Msa17ORFA2P | |
| 4681 | 454 aa hypothetical protein | |||
| 5919 | 67 aa hypothetical protein HMPREF1065_01803 | |||
| 5920 | S | S5.Pvu1098ORF7795P (100% identity) | S1.Msa17ORFH2P | |
| 5922 | Integrase/recombinase | |||
| 5923 | type I restriction endonuclease subunit S | |||
| 5924 | S | S3.PvuC06ORF3690P (100% identity) | S2.Msa17ORFH2P | |
| 5925 | S | S2.Pvu1098ORF7795P (100% identity) | S3.Msa17ORFH2P | |
| 5927 | 376 aa hypothetical protein BACDOR_00640 | |||
| 5929 | M | M.Pvu201ORF22395P (100% identity) | M.Msa17ORFH2P | |
| 5931 | R | PvuC06ORF3690P (100% identity) | Msa17ORFH2P | |
| 5934 | C | C.Pvu201ORF22395P (100% identity) | C.Msa17ORFH2P | |
| 5935 | uncharacterized protein BN496_01499 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7 | 147 aa hypothetical protein QAU_1028 | |||
| 9 | M | M.PmeBin85ORFGP (100% identity) | M.Msa17ORFDP | |
| 13 | 112 aa hypothetical protein BN3662_02704 | |||
| 21 | 77 aa hypothetical protein | |||
| 22 | M | M.Ebo1231ORF17050P (100% identity) | M.Msa17ORFMP | |
| 28 | 60 aa hypothetical protein | |||
| 48 | 149 aa hypothetical protein bolteae] | |||
| 51 | M | M.Ebo1231ORF6970P (100% identity) | M.Msa17ORFRP | |
| 54 | 66 aa hypothetical protein | |||
| 83 | 60 aa hypothetical protein | |||
| 84 | M | M.Cbo613ORF8710P (100% identity) | M.Msa17ORFPP | |
| 87 | 389 aa hypothetical protein | |||
| 63 | 80 aa hypothetical protein | |||
| 64 | R | Ebo2ORF19175P (94% identity) | Msa17ORFF2P | |
| 66 | M | M1.Ebo1231ORF8265P (100% identity) | M2.Msa17ORFF2P | |
| 67 | M | M2.Ebo1231ORF8265P (96% identity) | M1.Msa17ORFF2P | |
| 68 | DUF305 domain-containing protein | |||
| 69 | 477 aa hypothetical protein | |||
| ??? | RM | Ebo1231ORF19465P (100% identity) | Msa17ORFL1P | |
| 73 | S | S.Ebo1231ORF19465P (100% identity) | S.Msa17ORFL1P | |
| 74 | 67 aa hypothetical protein | |||
| 79 | 74 aa hypothetical protein CLOBOL_03905 bolteae ATCC BAA-613] | |||
| ??? | M | M.Ebo1231ORF30215P (100% identity) | M.Msa17ORFI1P | |
| 87 | 79 aa hypothetical protein | |||
| 77 | PrgI family protein dolichum] | |||
| 80 | M | M.PmeBin390ORFAP (76% identity) | M.Msa17ORFR1P | |
| 83 | group II intron reverse transcriptase/maturase gnavus] | |||
| 147 | 118 aa hypothetical protein AS222_06105 | |||
| 148 | M | M.Cbo613FORF10550P (100% identity) | M.Msa17ORFOP | |
| 150 | PrgI family protein | |||
| 190 | 143 aa hypothetical protein CLOSYM_00892 symbiosum ATCC 14940] | |||
| 194 | M | M.Ebo1231ORF20380P (100% identity) | M.Msa17ORFQP | |
| 196 | 95 aa hypothetical protein | |||
| 201 | 102 aa hypothetical protein | |||
| 202 | M | M.Ebo2ORF12460P (100% identity) | M.Msa17ORFC1P | |
| 205 | 303 aa hypothetical protein | |||
| 211 | 61 aa hypothetical protein | |||
| 213 | M | M.Ebo2ORF12480P (99% identity) | M.Msa17ORFD1P | |
| 215 | 67 aa hypothetical protein | |||
| 232 | 79 aa hypothetical protein | |||
| 236 | M | M.PmeBin61ORFCP (98% identity) | M.Msa17ORFLP | |
| 240 | 319 aa hypothetical protein | |||
| 271 | 235 aa hypothetical protein HMPREF0127_05255 | |||
| 274 | RM | PmeBin96ORFBP (99% identity) | Msa17ORFE1P | |
| 275 | 79 aa hypothetical protein | |||
| 430 | DNA-binding protein | |||
| 431 | M | M.Rgns29149ORF255P (100% identity) | M.Msa17ORFP1P | |
| 432 | GTPase subunit of restriction endonuclease | |||
| 345 | 161 aa hypothetical protein | |||
| 347 | M | M.Bov8483aORF1960P (100% identity) | M.Msa17ORFXP | |
| 348 | histidine kinase | |||
| 492 | 30S ribosomal protein S27e | |||
| 494 | M | M.Rgns29149ORF375P (100% identity) | M1.Msa17ORFQ1P | |
| 497 | M | M.Rgns29149ORF380P (100% identity) | M2.Msa17ORFQ1P | |
| 501 | 275 aa hypothetical protein C806_00750 | |||
| 458 | 462 aa hypothetical protein HMPREF2141_01675 | |||
| 459 | M | M.Pvu626ORF9540P (100% identity) | M.Msa17ORFU1P | |
| 460 | peptide ABC transporter ATP-binding protein | |||
| 464 | 101 aa hypothetical protein | |||
| 466 | M | M.BthI5482ORF9380P (100% identity) | M.Msa17ORFV1P | |
| 467 | site-specific integrase | |||
| 458 | 292 aa hypothetical protein | |||
| 459 | M | M.PmeBin96ORFEP (100% identity) | M.Msa17ORFJP | |
| 460 | DGQHR domain-containing protein | |||
| 891 | 71 aa hypothetical protein | |||
| 895 | RM | CaeORF1256P (100% identity) | Msa17ORFFP | |
| 900 | DUF262 domain-containing protein | |||
| 606 | 111 aa hypothetical protein | |||
| 607 | M | M.BccORFGP (100% identity) | M.Msa17ORFI2P | |
| 608 | 182 aa hypothetical protein | |||
| 620 | 184 aa hypothetical protein | |||
| 621 | M | M.BccORFHP (100% identity) | M.Msa17ORFJ2P | |
| 622 | phosphoadenosine phosphosulfate reductase | |||
| 884 | 93 aa hypothetical protein | |||
| 885 | M | M.PvuC06ORF3565P (99% identity) | M.Msa17ORFIP | |
| 887 | 73 aa hypothetical protein | |||
| 931 | 725 aa hypothetical protein A3D31_06155 | |||
| 932 | M | M.BthVORF2355P (100% identity) | M.Msa17ORFTP | |
| 933 | transcriptional regulator, AraC family, partial | |||
| 1173 | 137 aa hypothetical protein | |||
| ??? | M | M.Rgns29149ORF7275P (100% identity) | M.Msa17ORFK2P | |
| 1178 | 94 aa hypothetical protein | |||
| 805 | adenine-specific methyltransferase EcoRI family protein | |||
| 807 | M | M.BcaC61ORF867P (100% identity) | M.Msa17ORFHP | |
| 809 | MORN repeat protein | |||
| 911 | hybrid sensor histidine kinase/response regulator | |||
| 912 | M | M1.PmeBin7ORFAP (100% identity) | M1.Msa17ORFYP | |
| 913 | R | PmeBin7ORFAP (100% identity) | Msa17ORFYP | |
| 915 | M | M2.PmeBin7ORFAP (100% identity) | M2.Msa17ORFYP | |
| 916 | rubrerythrin | |||
| 1066 | 127 aa hypothetical protein | |||
| 1067 | RM | Bov8483FORF11035P (100% identity) | Msa17ORFH1P | |
| 1069 | 310 aa hypothetical protein BACOV975_02621 | |||
| 1615 | 80 aa hypothetical protein | |||
| 1616 | RM | BvuVIC01ORF2016P (100% identity) | Msa17ORFEP | |
| 1619 | DNA-processing protein DprA | |||
| 2125 | 142 aa hypothetical protein | |||
| 2126 | M | PxyORF2592P (94% identity) | M2.Msa17ORFE2P | |
| 2127 | RM | BthI5482ORF12450P (100% identity) | Msa17ORFE2P | |
| 2131 | SNF2/RAD54 family helicase | |||
| 2174 | integrase | |||
| 2175 | R | BccI (100% identity) | CCATC | Msa17ORFZ1P |
| 2176 | M | M2.BccI (100% identity) | CCATC | M2.Msa17ORFZ1P |
| 2177 | M | M1.PmeBin35ORFAP (100% identity) | CCATC | M1.Msa17ORFZ1P |
| 2178 | 72 aa hypothetical protein | |||
| 2432 | XRE family transcriptional regulator | |||
| 2433 | M | M.BthVORF4754P (100% identity) | M.Msa17ORFGP | |
| 2434 | histidine kinase | |||
| 2457 | site-specific integrase | |||
| 2459 | M | M.Bov8483aORF10050P (100% identity) | M.Msa17ORFM1P | |
| 2462 | 421 aa hypothetical protein BGL_2c26870 | |||
| 2462 | 421 aa hypothetical protein BGL_2c26870 | |||
| 2463 | RM | Bov8483FORF13845P (100% identity) | Msa17ORFN1P | |
| 2465 | site-specific recombinase, phage integrase family | |||
| 2530 | 201 aa hypothetical protein | |||
| 2533 | M | M.BunC05ORF4092P (100% identity) | M.Msa17ORFO1P | |
| 2535 | 283 aa hypothetical protein HMPREF0127_00400 | |||
| 4818 | 1222 aa hypothetical protein | |||
| 4820 | M | M.Pvu1098ORF9885P (100% identity) | M.Msa17ORFD2P | |
| 4822 | 134 aa hypothetical protein | |||
| 6054 | cell division protein DamX | |||
| 6057 | M | M.UbaC1152DamP (100% identity) | GATC | M.Msa17DamP |
| 6059 | Tryptophan--tRNA ligase | |||
| 6365 | 59 aa hypothetical protein SFxv_3614 | |||
| 6366 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Msa17ORFBP |
| 6368 | tRNA-dihydrouridine synthase B | |||
| 9844 | HD domain protein | |||
| 9845 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Msa17DcmP |
| 9847 | V | V.EcoTX1999Dcm2P (100% identity) | V.Msa17DcmP | |
| 9850 | YedA | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 27 | TIR domain | |||
| 30 | M | M.Ebo1231ORF11650P (100% identity) | M.Msa17ORFB1P | |
| 32 | 413 aa hypothetical protein bolteae] | |||
| 33 | 109 aa hypothetical protein | |||
| 34 | R | Ebo1231ORF11650P (100% identity) | Msa17ORFB1P | |
| 39 | 117 aa hypothetical protein CLOBOL_05630 bolteae ATCC BAA-613] | |||
| 42 | 115 aa hypothetical protein | |||
| 43 | M | M.Cbo613ORF23625P (100% identity) | M.Msa17ORFNP | |
| 45 | DUF2634 domain-containing protein | |||
| 46 | 61 aa hypothetical protein | |||
| 47 | R | Ebo1231ORF21160P (100% identity) | Msa17ORFNP | |
| 52 | ISL3 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 36 | anti-adapter protein IraM | |||
| 37 | R | SsoSE61ORF22640P (100% identity) | YCGR | Msa17ORFAP |
| 38 | pinE invertase/site-specific DNA recombinase | |||
| 76 | 85 aa hypothetical protein | |||
| 77 | R | Ebo1231MrrP (98% identity) | Msa17MrrP | |
| 79 | ABC transporter ATP-binding protein clostridioforme] | |||
| 200 | glutamate binding periplasmic protein | |||
| 201 | R | Rgns29149ORF3980P (100% identity) | Msa17ORFVP | |
| 202 | 73 aa hypothetical protein | |||
| 1502 | 80 aa hypothetical protein | |||
| 1503 | R | BccMcrBP (100% identity) | Msa17McrBP | |
| 1505 | R | PmeBin35McrCP (100% identity) | Msa17McrCP | |
| 1506 | uncharacterized protein BN535_01935 | |||
| 3377 | 100 aa hypothetical protein Ec53638_1442 | |||
| 3378 | R | EcoW12McrBP (100% identity) | Msa17McrB2P | |
| 3379 | R | EcoZK126McrCP (100% identity) | Msa17McrC2P | |
| 3380 | 931 aa hypothetical protein | |||
| 11881 | anti-adapter protein IraM | |||
| 11882 | R | SsoSE61ORF22640P (100% identity) | YCGR | Msa17ORFCP |
| 11883 | pinE invertase/site-specific DNA recombinase | |||