Propionibacterium freudenreichii JS15a |
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Putative Propionibacterium freudenreichii JS15a RM systems
Ref: Laine,P.K.S. unpublished
REBASE ref # 22611
Complete sequence: 2,616,005 bp
GenBank #: LT618788
REBASE acronym: PfrJS15a
Org_num: 25942
All begin PFR_JS15-2_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 131 | DNA polymerase | |||
| 132 | R | PfrUF1ORF10885P (100% identity) | PfrJS15aORF135P | |
| ??? | S | S1.PfrJS15ORF135P (100% identity) | S1.PfrJS15aORF135P | |
| ??? | S | S2.PfrPBF14ORFCP (100% identity) | S2.PfrJS15aORF135P | |
| 135 | M | M.PfrUF1ORF10885P (100% identity) | M.PfrJS15aORF135P | |
| 136 | ABC-type Phosphonate and Molybdate | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 125 | 111 aa Hypothetical protein | |||
| 126 | R | PfrJS15ORF126P (100% identity) | C | PfrJS15aORF126P |
| 127 | 140 aa Hypothetical protein | |||
| 280 | 703 aa Hypothetical protein | |||
| 281 | M | M.PfrPBF12ORFCP (100% identity) | CCWGG | M.PfrJS15aII |
| 282 | Carbohydrate kinase, PfkB family | |||
| 302 | Transposase of ISAar20, ISL3 family | |||
| 303 | RM | PfrPBF12ORFAP (100% identity) | CTTCNAC | PfrJS15aIII |
| 304 | SecB-like chaperone Rv1957 | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2039 | Type I restriction-modification system DNA | |||
| 2040 | M | M.PfrUF1I (100% identity) | AGCAGY | M.PfrJS15aI |
| 2041 | R | PfrUF1IP (100% identity) | AGCAGY | PfrJS15aIP |
| 2042 | PF12952 domain protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 325 | MATE efflux family protein | |||
| 326 | R | PfrTL29Mrr3P (100% identity) | PfrJS15aMrrP | |
| 327 | Protein of hypothetical function DUF299 | |||
| 357 | 99 aa Hypothetical protein | |||
| 358 | R | Helicase C-terminal domain protein | PfrJS15aORF358BP | |
| 359 | Transposase of ISAar43, IS3 family, IS407 group, | |||
| 360 | Insertion sequence IS407 OrfB | |||
| 361 | R | PfrJS15ORF358P (60% identity) | PfrJS15aORF358AP | |
| 362 | Transporter, anaerobic C4-dicarboxylate uptake | |||