Clostridium ljungdahlii DSM 13528 |
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Putative Clostridium ljungdahlii DSM 13528 RM systems
Ref: Kopke,M. et al. Proc. Natl. Acad. Sci. U.S.A. (2010) In press
REBASE ref # 11885
Complete sequence: 4,630,065 bp
GenBank #: CP001666 (NC_014328)
REBASE acronym: Clj
Org_num: 6104
All begin CLJU_c
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3300 | 74 aa hypothetical protein | |||
| 3310 | M | M.CboCP05ORF950P (92% identity) | CAGNNNNNGAT | M.CljII |
| 3320 | S | S1.DspTolMORF10280P (56% identity) | CAGNNNNNGAT | S.CljII |
| 3330 | R | Psp2237ORF3296P (91% identity) | CAGNNNNNGAT | CljIIP |
| 3340 | protein with a sigma-70 r4 domain | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3470 | phage-related protein | |||
| 3480 | M | M.Cty776ORFBP (93% identity) | M.CljORF3480P | |
| 3490 | 103 aa conserved hypothetical protein | |||
| 8450 | predicted Na+ driven multidrug efflux pump | |||
| 8460 | RM | M.Cau10061ORFFP (99% identity) | GATAAT | CljIII |
| 8470 | 69 aa hypothetical protein | |||
| 24690 | predicted cation efflux pump | |||
| 24700 | RM | Cau10061II (98% identity) | GTTAAT | CljORF24700P |
| 24710 | 106 aa hypothetical protein | |||
| 30970 | membrane associated GGDEF domain containing | |||
| ??? | M | M.Csps001ORF12395P (66% identity) | M.CljORF30980P | |
| 31000 | predicted small multidrug resistance protein | |||
| 32680 | 853 aa conserved hypothetical protein | |||
| 32690 | RM | Csps001ORF5600P (69% identity) | CljORF32690P | |
| 32700 | 1188 aa conserved hypothetical protein | |||
| 33970 | predicted anti-sigma factor F antagonist | |||
| 33980 | M | M.Cau10061I (100% identity) | CAAAAAR | M.CljI |
| 33990 | predicted polysaccharide deacetylase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15140 | 143 aa hypothetical protein | |||
| 15150 | R | Cau10061McrB5P (100% identity) | CljMcrBP | |
| 15160 | predicted transcriptional regulator | |||