Porphyromonas gingivalis TDC 60 |
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Putative Porphyromonas gingivalis TDC 60 RM systems
Ref: Acuna-Amador,L. et al. BMC Genomics 19 (1), 54 (2018)
REBASE ref # 25995
Complete sequence: 2,334,880 bp
GenBank #: CP025931
REBASE acronym: PgiTDC60
Org_num: 27207
All begin CF002_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1958 | integrase | |||
| 1959 | S | S1.Pgi60ORF1963P (88% identity) | S1.PgiTDC60ORF1963P | |
| 1960 | S | S2.Pgi60ORF1963P (100% identity) | S2.PgiTDC60ORF1963P | |
| 1961 | death-on-curing family protein | |||
| 1962 | DNA-binding protein | |||
| 1963 | M | M.Pgi60ORF1963P (100% identity) | M.PgiTDC60ORF1963P | |
| 1964 | R | Pgi60ORF1963P (100% identity) | PgiTDC60ORF1963P | |
| 1965 | C | C.Pgi60ORF1963P (100% identity) | C.PgiTDC60ORF1963P | |
| 1966 | Adenine-specific DNA methylase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1573 | inner membrane | |||
| 1575 | M | M.Pgi60ORF1575P (100% identity) | CTAG | M.PgiTDC60ORF1575P |
| 1577 | R | Pgi60ORF1575P (95% identity) | CTAG | PgiTDC60ORF1575P |
| 1579 | transporter | |||
| 1936 | RloC AAA_13 super family protein | |||
| 1937 | S | S.Pgi60ORF1938P (100% identity) | S.PgiTDC60ORF1938P | |
| 1938 | M | M.Pgi60ORF1938P (100% identity) | M.PgiTDC60ORF1938P | |
| 1940 | 103 aa hypothetical protein | |||
| 2006 | 670 aa hypothetical protein | |||
| 2009 | M | M.Tfo2417ORF12465P (100% identity) | M.PgiTDC60ORF2009P | |
| 2011 | transposase in ISPg8 | |||
| 607 | aminodeoxychorismate lyase | |||
| 605 | RM | Pin2903ORF8480AP (100% identity) | PgiTDC60ORF605AP | |
| 604 | RM | Pgi60ORF604P (100% identity) | PgiTDC60ORF605BP | |
| 601 | Zn-dependent dipeptidase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2082 | 150 aa hypothetical protein | |||
| 2083 | M | M.Pgi60ORF2083P (100% identity) | M.PgiTDC60ORF2083P | |
| 2084 | R | Pgi60ORF2083P (100% identity) | PgiTDC60ORF2083P | |
| 2085 | lysE type translocator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 891 | S-adenosylmethionine:tRNA | |||
| 890 | R | PgiC02MrrP (100% identity) | PgiTDC60MrrP | |
| 887 | phosphatidylserine decarboxylase proenzyme | |||