Phaeobacter inhibens P30 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Phaeobacter inhibens P30 RM systems
Ref: Freese,H.M. et al. Front Microbiol 8, 1659 (2017)
REBASE ref # 25228
| Sequence length: | GenBank #: | |
| Chromosome: | 3,699,460 bp | CP010617 |
| plasmid pP30_d: | 68,678 bp | CP010621 |
REBASE acronym: PinP30
Org_num: 27133
All begin PhaeoP30_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 152 | 98 aa hypothetical protein | |||
| 153 | M | M.PinP10I (97% identity) | GNNGANNNNNNNTGGG | M.PinP30I |
| 154 | S | S.MspMc7ORF7655P (68% identity) | GNNGANNNNNNNTGGG | S.PinP30I |
| 155 | R | Osp1561IP (98% identity) | GNNGANNNNNNNTGGG | PinP30IP |
| 156 | metal-dependent hydrolase | |||
| 473 | resolvase | |||
| 474 | M | M.EmoB1ORF1128P (90% identity) | TAAKNNNNGTC | M.PinP30II |
| 475 | S | S.UpbMLORF1466P (35% identity) | TAAKNNNNGTC | S.PinP30II |
| 476 | Pentapeptide repeats (8 copies) | |||
| 477 | R | AcrS137ORF11080P (95% identity) | TAAKNNNNGTC | PinP30IIP |
| 478 | 267 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 483 | 406 aa hypothetical protein | |||
| 484 | RM | PinP57III (100% identity) | ACACAG | PinP30IV |
| 485 | phage integrase, catalytic core | |||
| 936 | aminotransferase class-III | |||
| 939 | R | PinP59ORF964P (100% identity) | PinP30ORF940P | |
| 940 | M | M.PinT5ORFAP (100% identity) | M.PinP30ORF940P | |
| 942 | 68 aa hypothetical protein | |||
| 3162 | insertion sequence ATP binding protein | |||
| 3163 | RM | PinS45mORF14855P (72% identity) | PinP30ORF3160P | |
| 3164 | Restriction endonuclease | |||
| 3288 | adenylate and guanylate cyclase | |||
| 3289 | M | M.PinT5I (99% identity) | GANTC | M.PinP30III |
| 3290 | ribonuclease HII | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pP30_d | ||||
| 4071 | Superfamily I DNA and RNA helicase | |||
| 4072 | M | M.PinP54II (100% identity) | GATCGA | M.PinP30V |
| 4073 | R | PinP54IIP (100% identity) | GATCGA | PinP30VP |
| 4074 | 106 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3163 | Methyltransferase domain protein | |||
| 3164 | R | PinS45mMrrP (79% identity) | PinP30MrrP | |
| 3165 | transposase | |||