Escherichia coli Ec40 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli Ec40 RM systems
Ref: Pinnaka,A.K. et al. unpublished
REBASE ref # 25572
| Sequence length: | GenBank #: | |
| Chromosome: | 4,825,022 bp | CP025739 |
| plasmid unnamed: | 160,682 bp | CP025740 |
REBASE acronym: EcoEc40
Org_num: 27036
All begin C0R78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20885 | M48 family peptidase | |||
| 20890 | R | Eco16443ORF2409P (100% identity) | TCAGNNNNNNTGC | EcoEc40ORF20905P |
| 20895 | YecA family protein | |||
| 20900 | S | S.SenSMo01ORF8345P (100% identity) | TCAGNNNNNNTGC | S.EcoEc40ORF20905P |
| 20905 | M | M.SenSMo01ORF8345P (99% identity) | TCAGNNNNNNTGC | M.EcoEc40ORF20905P |
| 20910 | hypothetical protein | |||
| plasmid unnamed | ||||
| 26005 | type II toxin-antitoxin system | |||
| 26010 | M | M.SspS13ORF175P (100% identity) | M.EcoEc40ORF26010P | |
| 26015 | S | S.SspS13ORF175P (100% identity) | S.EcoEc40ORF26010P | |
| 26020 | R | EcoA1180ORF25535P (100% identity) | EcoEc40ORF26010P | |
| 26025 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5250 | ribulose-phosphate 3-epimerase | |||
| 5255 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoEc40DamP |
| 5260 | protein DamX | |||
| 9280 | PerC family transcriptional regulator | |||
| 9285 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoEc40ORF9285P |
| 9290 | LexA family transcriptional regulator | |||
| 9315 | hypothetical protein | |||
| 9320 | M | M.SflFF3ORF20115P (100% identity) | M.EcoEc40ORF9320P | |
| 9325 | phage holin, lambda family | |||
| 18330 | phosphohydrolase | |||
| 18335 | M | M.EcosEC29DcmP (100% identity) | CCWGG | M.EcoEc40DcmP |
| 18340 | V | V.SflFF64DcmP (100% identity) | V.EcoEc40DcmP | |
| 18345 | EamA family transporter | |||
| 20465 | DUF977 domain-containing protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.EcoEc40ORF20470P | |
| 20475 | 59 aa hypothetical protein | |||
| 22505 | 250 aa hypothetical protein | |||
| 22510 | M | M.Eba57ORF2526P (95% identity) | M.EcoEc40ORF22510P | |
| 22515 | 74 aa hypothetical protein | |||
| 24235 | 100 aa hypothetical protein | |||
| 24240 | M | M.Ero1505ORF7640P (100% identity) | M.EcoEc40ORF24240P | |
| 24245 | serine protease | |||
| 24260 | phage regulatory protein/antirepressor Ant | |||
| 24265 | M | M2.Eco7152ORF1660P (100% identity) | M.EcoEc40ORF24265P | |
| 24270 | phage N-6-adenine-methyltransferase | |||
| 24265 | DNA cytosine methyltransferase | |||
| 24270 | M | M.EcoNIH4ORF26475P (99% identity) | M.EcoEc40ORF24270P | |
| 24275 | GntR family transcriptional regulator | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10895 | 90 aa hypothetical protein | |||
| 10900 | R | EcoHM107McrBP (100% identity) | EcoEc40McrBP | |
| 10905 | R | SflSTLE4McrCP (100% identity) | EcoEc40McrCP | |
| 10910 | HNH endonuclease | |||