Salmonella enterica subsp. enterica serovar Pomona ATCC 10729 |
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Putative Salmonella enterica subsp. enterica serovar Pomona ATCC 10729 RM systems
Ref: Allard,M.W. et al. BMC Genomics 13, 32 (2012)
REBASE ref # 25548
| Sequence length: | GenBank #: | |
| Chromosome: | 4,482,117 bp | CP019186 |
| plasmid pATCC10729_01: | 100,629 bp | CP019187 |
| plasmid pATCC10729_02: | 95,279 bp | CP019188 |
REBASE acronym: Sen10729
Org_num: 8349
All begin SEEPO729_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19080 | 322 aa hypothetical protein | |||
| 19085 | R | Sen552ORF19550P (100% identity) | CGAYNNNNNNNRTRTC | Sen10729IIP |
| 19090 | M | M.SenUA36ORF834P (100% identity) | CGAYNNNNNNNRTRTC | M.Sen10729II |
| 19095 | S | S.SenUA36ORF834P (100% identity) | CGAYNNNNNNNRTRTC | S.Sen10729II |
| 19100 | 106 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1690 | cell division protein DamX | |||
| 1695 | M | DNA adenine methylase | GATC | M.Sen10729Dam |
| 1700 | ribulose-phosphate 3-epimerase | |||
| 2195 | DUF2556 domain-containing protein | |||
| 2200 | M | adenine-specific DNA-methyltransferase | ATGCAT | M.Sen10729III |
| 2205 | Fis family transcriptional regulator | |||
| 8730 | phosphohydrolase | |||
| 8735 | M | M.Sen552DcmP (100% identity) | CCWGG | M.Sen10729DcmP |
| 8740 | V | very short patch repair endonuclease | V.Sen10729DcmP | |
| 8745 | amino acid exporter | |||
| 19235 | 241 aa hypothetical protein | |||
| 19240 | R | Ssp8103ORF19015P (100% identity) | Sen10729ORF19240P | |
| 19245 | 303 aa hypothetical protein | |||
| 20120 | toxin | |||
| ??? | M | M.Sen0678ORF11295P (100% identity) | CCGCGG | M.Sen10729ORF6403P |
| 20130 | R | SenSARA26ORF20210P (100% identity) | CCGCGG | Sen10729ORF6403P |
| 20135 | 19 aa hypothetical protein | |||
| plasmid pATCC10729_01 | ||||
| 22830 | 73 aa hypothetical protein | |||
| 22835 | M | M.Sen74091ORF23005P (100% identity) | M.Sen10729ORF22835P | |
| 22840 | DNA breaking-rejoining protein | |||
| plasmid pATCC10729_02 | ||||
| 23290 | recombination-associated protein RdgC | |||
| 23295 | M | M.Ecoppa9ORF26135P (100% identity) | M.Sen10729ORF23295P | |
| 23310 | 61 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16775 | cytochrome ubiquinol oxidase subunit I | |||
| 16780 | R | Sen7697ORF17040P (99% identity) | CAGAG | Sen10729IP |
| 16785 | M | M.Sens29882ORF18310P (100% identity) | CAGAG | M.Sen10729I |
| 16790 | MFS transporter | |||