Pseudomonas syringae pv Tomato str. DC3000 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Pseudomonas syringae pv Tomato str. DC3000 RM systems
Ref: Buell,C.R. et al. Proc. Natl. Acad. Sci. U.S.A. 100 (18), 10181-10186 (2003)
REBASE ref # 7966
Complete sequence: 6,397,126 bp
GenBank #: AE016853 (NC_004578)
REBASE acronym: PsyT
Org_num: 3707
All begin PSPTO_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4 | DNA gyrase, subunit B | |||
| 5 | M | M.Psy2254ORF13210P (100% identity) | M.PsyTORF5P | |
| 6 | S | S.PsytsORFHP (95% identity) | S.PsyTORF5P | |
| 7 | protein of unknown function | |||
| 8 | R | PsytsORFHP (100% identity) | PsyTORF5P | |
| 9 | ISPsy3, transposase | |||
| 1085 | conserved protein of unknown function | |||
| 1086 | M | M.PsytsORFGP (100% identity) | M.PsyTORF1086P | |
| 1087 | S | S1.PsytsORFGP (100% identity) | S.PsyTORF1086P | |
| 1088 | conserved protein of unknown function | |||
| 1089 | R | PsytsORFGP (100% identity) | PsyTORF1086P | |
| 1090 | protein of unknown function | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 36 | ISPsy5, Orf1 | |||
| 37 | RM | PsytsORFEP (97% identity) | PsyTORF37P | |
| 38 | conserved domain protein | |||
| 284 | 70 aa conserved hypothetical protein | |||
| 285 | S | S.PsytsORFAP (92% identity) | S.PsyTORF285P | |
| ??? | RM | PsytsORFAP (100% identity) | PsyTORF285P | |
| 287 | site-specific recombinase, phage integrase | |||
| 2385 | transcriptional regulator, putative | |||
| 2386 | M | M.PsytsORFFP (100% identity) | M.PsyTORF2386P | |
| 2387 | ISPsy4, transposase | |||
| 3387 | conserved protein of unknown function | |||
| 3388 | M | M.PsytsORFBP (83% identity) | M.PsyTORF3388P | |
| 3389 | lysozyme, putative | |||
| 3426 | 140 aa hypothetical protein | |||
| 3427 | M | M.PsytsORFCP (100% identity) | M.PsyTORF3427P | |
| 3428 | conserved domain protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1652 | 191 aa conserved hypothetical protein | |||
| 1653 | R | PsytsMcrBP (88% identity) | PsyTMcrBP | |
| 1654 | R | PsytsMcrCP (100% identity) | PsyTMcrCP | |
| 1655 | protein of unknown function | |||
| 1655 | protein of unknown function | |||
| 1656 | R | Psy2254GmrSDP (100% identity) | PsyTGmrSDP | |
| 1657 | protein of unknown function | |||