Escherichia coli DH5alpha |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli DH5alpha RM systems
Ref: Touzain,F. et al. PLoS ONE (2018) In press
REBASE ref # 25511
Complete sequence: 4,605,446 bp
GenBank #: CP025520
REBASE acronym: EcoDH5a
Org_num: 26879
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| ??? | 5-methylcytosine-specific restriction enzyme B | |||
| ??? | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoDH5aORFCP |
| ??? | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoDH5aORFCP |
| ??? | R | Esp17TGCORF18925P (100% identity) | AACNNNNNNGTGC | EcoDH5aORFCP |
| ??? | methylated adenine and cytosine restriction protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | M | M.SenHNK130ORF1185P (100% identity) | M.EcoDH5aORFDP | |
| ??? | V | V.Msa17DcmP (100% identity) | V.EcoDH5aDcmP | |
| ??? | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoDH5aDcmP |
| ??? | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoDH5aORFBP |
| ??? | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoDH5aDamP |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | SsoSE61ORF22640P (100% identity) | YCGR | EcoDH5aORFAP |
| ??? | R | Msa17McrC2P (100% identity) | EcoDH5aMcrCP | |
| ??? | R | Msa17McrB2P (100% identity) | EcoDH5aMcrBP | |
| ??? | restriction endonuclease subunit S | |||
| ??? | type I restriction-modification system deoxyribonuclease | |||
| ??? | R | SenHNK130MrrP (100% identity) | EcoDH5aMrrP | |