Thiomonas species 3As |
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Putative Thiomonas species 3As RM systems
Ref: Arsene-Ploetze,F. et al. Plos Genet. 6 (2) (2010) In press
REBASE ref # 11779
| Sequence length: | GenBank #: | |
| Chromosome: | 3,738,778 bp | FP475956 |
| plasmid pTHI: | 46,756 bp | FP475957 |
REBASE acronym: Tsp3
Org_num: 6038
All begin THI_, THI_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 75 | KDP operon transcriptional regulatory protein | |||
| 76 | M | N-6 DNA methylase:Type I | M.Tsp3ORF76P | |
| 77 | Helper of transposition of ISThsp2, IS21 family, | |||
| 951 | negative transcriptional regulator | |||
| 952 | M | M.Tsp3ORF612P (94% identity) | M.Tsp3ORF952P | |
| 953 | S | S.BpsE8ORF2452P (72% identity) | S.Tsp3ORF952P | |
| 954 | 204 aa Hypothetical protein; putative exported protein | |||
| 955 | R | Pph4ORF2505P (80% identity) | Tsp3ORF952P | |
| 956 | helper of transposition of ISThsp2, IS21 family, | |||
| 1309 | 37 aa hypothetical protein | |||
| 1310 | M | Type I restriction-modification system | M.Tsp3ORF1310P | |
| 1311 | S | S.Msp45379ORF21570P (33% identity) | S.Tsp3ORF1310P | |
| 1312 | 379 aa hypothetical protein | |||
| 1313 | R | 67 aa hypothetical protein | Tsp3ORF1310P | |
| 1314 | ORFA of ISThsp3, IS66 family insertion sequence | |||
| 3472 | 55 aa hypothetical protein | |||
| ??? | M | M.SmcB1ORF4P (85% identity) | M.Tsp3ORF3474P | |
| 3476 | S | S.NspE11ORF2265P (42% identity) | S.Tsp3ORF3474P | |
| 3477 | R | HseOs34ORFEP (75% identity) | Tsp3ORF3474P | |
| 3478 | 84 aa hypothetical protein | |||
| 3677 | 3-hydroxyisobutyrate dehydrogenase | |||
| 3678 | M | M.Tsp3ORF952P (94% identity) | M.Tsp3ORF612P | |
| 3679 | S | S.Tsp3ORF952P (51% identity) | S.Tsp3ORF612P | |
| 3680 | restriction endonuclease-like | |||
| 3681 | R | SmcB1ORF915P (76% identity) | Tsp3ORF612P | |
| 3682 | 148 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 78 | transposase of ISThsp2, IS21 family, ORFA | |||
| 79 | R | Bmu410ORF15890P (57% identity) | GATATC | Tsp3ORF80P |
| 80 | M | M.Lsp412ORF18425P (54% identity) | GATATC | M.Tsp3ORF80P |
| 83 | 144 aa conserved hypothetical protein | |||
| 1446 | 74 aa hypothetical protein | |||
| 1447 | R | RsoRS10ORF975P (82% identity) | GTCGAC | Tsp3ORF1448P |
| 1448 | M | M.PglR39ORFHP (71% identity) | GTCGAC | M.Tsp3ORF1448P |
| 1449 | 199 aa conserved hypothetical protein; putative | |||
| 1937 | RNA polymerase sigma factor | |||
| 1939 | M | M1.RsoSFCORF24465P (91% identity) | M1.Tsp3ORF1939P | |
| 1940 | M | M2.RsoSFCORF24465P (92% identity) | M2.Tsp3ORF1939P | |
| 1941 | 121 aa conserved hypothetical protein | |||
| 2293 | 284 aa hypothetical protein | |||
| 2294 | RM | TinORF1859P (93% identity) | Tsp3ORF2294P | |
| 2295 | 133 aa Conserved hypothetical protein; putative PIN | |||
| 2891 | 90 aa conserved hypothetical protein | |||
| 2892 | RM | PsytsORFAP (11% identity) | Tsp3ORF2892P | |
| 2893 | 129 aa conserved hypothetical protein | |||
| plasmid pTHI | ||||
| 23 | 395 aa hypothetical protein | |||
| 25 | M | M.Tte58ORF18520P (76% identity) | M.Tsp3ORF25P | |
| 26 | 98 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1463 | 287 aa conserved hypothetical protein | |||
| 1464 | M | M.DtsMTQ3ORF8595P (86% identity) | M.Tsp3ORF1464P | |
| 1465 | 351 aa hypothetical protein | |||
| 1466 | R | TspFBORFDP (47% identity) | Tsp3ORF1464AP | |
| 1468 | R | TspFBORFDP (48% identity) | Tsp3ORF1464BP | |
| 1470 | transposase ISThsp4, IS3 family, ORFB | |||
| 3713 | restriction endonuclease | |||
| 3714 | R | TinORF1530P (92% identity) | Tsp3ORF3715P | |
| 3715 | M | M.GmeII (72% identity) | M.Tsp3ORF3715P | |
| 3716 | 108 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3330 | Aspartyl-tRNA synthetase (Aspartate--tRNA | |||
| 3331 | R | TinMrrP (100% identity) | Tsp3Mrr2P | |
| 3332 | Phospho-2-dehydro-3-deoxyheptonate aldolase, | |||
| 3679 | type I restriction-modification (R-M) | |||
| 3680 | R | PaePALA23MrrP (44% identity) | Tsp3MrrP | |
| 3681 | Type I site-specific deoxyribonuclease HsdR | |||
| 3712 | 121 aa hypothetical protein | |||
| 3713 | R | TinMrr2P (67% identity) | Tsp3Mrr3P | |
| 3714 | type III restriction enzyme, res | |||