Clostridioides difficile W0022a |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Clostridioides difficile W0022a RM systems
Ref: Chen,D.S. et al. unpublished
REBASE ref # 26157
Complete sequence: 4,188,456 bp
GenBank #: CP025046
REBASE acronym: Cdi22a
Org_num: 26782
All begin CWR55_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15405 | DUF262 domain-containing protein | |||
| ??? | R | Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | Cdi22aORF15435P |
| 15415 | 142 aa hypothetical protein | |||
| 15420 | nucleotidyltransferase domain-containing | |||
| 15425 | 102 aa hypothetical protein | |||
| 15430 | S | S.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | S.Cdi22aORF15435P |
| 15435 | M | M.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | M.Cdi22aORF15435P |
| 15440 | ketose-bisphosphate aldolase | |||
| 15960 | 111 aa hypothetical protein | |||
| 15965 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | Cdi22aORF15980P |
| 15970 | 423 aa hypothetical protein | |||
| 15975 | S | S.Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | S.Cdi22aORF15980P |
| 15980 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.Cdi22aORF15980P |
| 15985 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1085 | 38 aa hypothetical protein | |||
| 1090 | M | M.CdiS122ORF7470P (100% identity) | M.Cdi22aORF1090P | |
| 1095 | 69 aa hypothetical protein | |||
| 14115 | phospholipase | |||
| 14120 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi22aORF14120P |
| 14125 | Rrf2 family transcriptional regulator | |||
| 15800 | class B sortase | |||
| 15805 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi22aORF15805P |
| 15810 | 872 aa hypothetical protein | |||
| 15885 | 383 aa hypothetical protein | |||
| 15890 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.Cdi22aORF15890P |
| 15895 | M | M2.Pdi30ORF18765P (100% identity) | CATCG | M2.Cdi22aORF15890P |
| 15900 | recombinase family protein | |||
| 16845 | RusA family crossover junction | |||
| 16850 | M | M.Pdi630ORF9350P (100% identity) | TGGCCA | M.Cdi22aORF16850P |
| 16855 | 37 aa hypothetical protein | |||
| 16895 | 69 aa hypothetical protein | |||
| 16900 | M | M.Cdi20472ORF18155P (100% identity) | M.Cdi22aORF16900P | |
| 16905 | 91 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10195 | AAA family ATPase | |||
| 10200 | R | Pdi30McrCP (100% identity) | Cdi22aMcrCP | |
| 10205 | R | Pdi30McrBP (100% identity) | Cdi22aMcrBP | |
| 10210 | cell division protein | |||