Escherichia coli LS4 |
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Putative Escherichia coli LS4 RM systems
Ref: Tan,c. unpublished
REBASE ref # 22600
| Sequence length: | GenBank #: | |
| Chromosome: | 5,196,956 bp | CP024717 |
| plasmid p1LS4: | 111,779 bp | CP024718 |
REBASE acronym: EcoLS4
Org_num: 26584
All begin CUB99_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9605 | 699 aa hypothetical protein | |||
| 9610 | M | M.EcoZ247ORF19790P (100% identity) | M.EcoLS4ORF9610P | |
| 9615 | S | S.EcoZ247ORF19790P (100% identity) | S.EcoLS4ORF9610P | |
| 9620 | R | EcoNQ3ORF21185P (100% identity) | EcoLS4ORF9610P | |
| 9625 | 237 aa hypothetical protein | |||
| 9985 | toll/interleukin-1 receptor domain-containing | |||
| 9990 | M | M.EcoW004ORF18655P (100% identity) | M.EcoLS4ORF9990P | |
| 9995 | S | S.EcoW004ORF18655P (100% identity) | S.EcoLS4ORF9990P | |
| 10000 | DUF4268 domain-containing protein | |||
| 10005 | R | EcoW004ORF18655P (100% identity) | EcoLS4ORF9990P | |
| 10010 | 165 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 270 | 108 aa hypothetical protein | |||
| 285 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoLS4ORF285P |
| 290 | TrmB family transcriptional regulator | |||
| 3225 | XRE family transcriptional regulator | |||
| 3230 | M | M.KpnYN1ORFGP (89% identity) | M.EcoLS4ORF3230P | |
| 3235 | 71 aa hypothetical protein | |||
| 7420 | zinc ribbon domain-containing protein | |||
| 7425 | M | M.EcosEC31ORF18555P (100% identity) | GGTACC | M.EcoLS4ORF7425P |
| 7430 | integrase | |||
| 9300 | lysis protein S | |||
| 9305 | M | M.Ecos142ORF20090P (100% identity) | M.EcoLS4ORF9305P | |
| 9310 | 67 aa hypothetical protein | |||
| 9340 | LexA family transcriptional regulator | |||
| 9345 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoLS4ORF9345P |
| 9350 | PerC family transcriptional regulator | |||
| 15115 | cell division protein DamX | |||
| 15120 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLS4DamP |
| 15125 | ribulose-phosphate 3-epimerase | |||
| 15750 | DUF2556 domain-containing protein | |||
| 15755 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoLS4ORF15755P |
| 15760 | Fis family transcriptional regulator | |||
| 19745 | 75 aa hypothetical protein | |||
| 19750 | M | M.EcoW113ORFIP (100% identity) | GATC | M.EcoLS4ORF19750P |
| 19755 | endonuclease | |||
| 23530 | phosphohydrolase | |||
| 23535 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoLS4DcmP |
| 23540 | V | V.SflC32DcmP (74% identity) | V.EcoLS4DcmP | |
| 23545 | drug/metabolite exporter YedA | |||
| plasmid p1LS4 | ||||
| 27000 | 73 aa hypothetical protein | |||
| 27005 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoLS4ORF27005P |
| 27010 | 103 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 9600 | cell filamentation protein Fic | |||
| 9605 | R | EcoW004GmrDP (100% identity) | EcoLS4GmrDP | |
| 9610 | SAM-dependent DNA methyltransferase | |||