Thiomonas intermedia K12 |
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Putative Thiomonas intermedia K12 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 11750
| Sequence length: | GenBank #: | |
| Chromosome: | 3,396,378 bp | CP002021 (NC_014153) |
| plasmid pTINT01: | 45,943 bp | CP002022 (NC_014154) |
REBASE acronym: Tin
Org_num: 5822
All begin Tint_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 69 | two component transcriptional regulator, winged | |||
| 70 | M | DNA methyltransferase | M.TinORF70P | |
| 71 | single-strand binding protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 105 | peptidase M24B X-Pro dipeptidase/aminopeptidase | |||
| 106 | M | M.AspJSORF426P (79% identity) | RGATCY | M.TinORF106P |
| 107 | Restriction endonuclease BglII | |||
| 106 | MT-A70 family protein | |||
| 107 | R | AspJSORF426P (85% identity) | TinORF107P | |
| 108 | Nitrilase/cyanide hydratase and apolipoprotein | |||
| 630 | protein of unknown function DUF820 | |||
| 631 | RM | Csp77ORF3735P (74% identity) | TinORF631P | |
| 632 | FAD-dependent pyridine nucleotide-disulfide | |||
| 1544 | 510 aa conserved hypothetical protein | |||
| 1545 | RM | PspXJJ1ORF4455P (77% identity) | TinORF1545P | |
| 1546 | transcriptional regulator, AbrB family | |||
| 1858 | 284 aa hypothetical protein | |||
| 1859 | RM | Tsp3ORF2294P (93% identity) | TinORF1859P | |
| 1860 | 102 aa conserved hypothetical protein | |||
| 2914 | protein of unknown function DUF159 | |||
| 2915 | RM | FmyP3GORFGP (49% identity) | TinORF2915P | |
| 2916 | pseudogene | |||
| plasmid pTINT01 | ||||
| 3220 | DNA invertase | |||
| ??? | RM | Isp302ORF15535P (34% identity) | TinORF3221P | |
| 3222 | transposase IS3/IS911 family protein | |||
| 3223 | pseudogene | |||
| ??? | RM | Isp302ORF15535P (60% identity) | TinORF3223P | |
| 3224 | SMC domain protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1529 | restriction endonuclease | |||
| 1530 | R | Tsp3ORF3715P (92% identity) | TinORF1530P | |
| 1531 | M | M.DspN47ORF45940P (49% identity) | M.TinORF1530P | |
| 1532 | 168 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1528 | 34 aa hypothetical protein | |||
| 1529 | R | Tsp3Mrr3P (67% identity) | TinMrr2P | |
| 1530 | type III restriction protein res subunit | |||
| 2782 | aspartyl-tRNA synthetase | |||
| 2783 | R | Tsp3Mrr2P (100% identity) | TinMrrP | |
| 2784 | phospho-2-dehydro-3-deoxyheptonate aldolase | |||