Lactobacillus salivarius BCRC 12574 |
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Putative Lactobacillus salivarius BCRC 12574 RM systems
Ref: Chen,C.C. and Chiu,S.H. unpublished
REBASE ref # 25853
| Sequence length: | GenBank #: | |
| Chromosome: | 1,507,589 bp | CP024063 |
| plasmid unnamed1: | 250,219 bp | CP024064 |
| plasmid unnamed2: | 269,701 bp | CP024065 |
REBASE acronym: Lsa12574
Org_num: 26454
All begin CR249_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 7675 | 78 aa hypothetical protein | |||
| 7680 | R | LsaCEA3ORF4520P (98% identity) | Lsa12574ORF7685P | |
| 7685 | M | M.LsaZLp4bORFFP (99% identity) | M.Lsa12574ORF7685P | |
| 7690 | S | S1.Lsa12574ORF7730P (87% identity) | S1.Lsa12574ORF7685P | |
| ??? | S | S2.LsaZSA5ORF5315P (62% identity) | S2.Lsa12574ORF7685P | |
| 7700 | site-specific integrase | |||
| 7700 | site-specific integrase | |||
| ??? | S | S2.Lsa12574ORF7730P (19% identity) | S1.Lsa12574ORF7720P | |
| ??? | S | S2.LsaAR809ORF785P (43% identity) | S2.Lsa12574ORF7720P | |
| 7710 | restriction endonuclease subunit S | |||
| ??? | S | S2.Lsa12574ORF7685P (25% identity) | S3.Lsa12574ORF7720P | |
| 7715 | S | S1.Lsa12574ORF7730P (83% identity) | S4.Lsa12574ORF7720P | |
| 7720 | M | M.Lsa12574ORF7685P (99% identity) | M.Lsa12574ORF7720P | |
| 7725 | 45 aa hypothetical protein | |||
| plasmid unnamed1 | ||||
| 8990 | phage tail protein | |||
| ??? | M | M.LsaLPM01ORFAP (48% identity) | M.Lsa12574ORF7730P | |
| 7740 | S | S2.LsaAR612ORF4575P (91% identity) | S1.Lsa12574ORF7730P | |
| 7745 | restriction endonuclease subunit S | |||
| 7750 | site-specific integrase | |||
| 7755 | S | S1.LsaS01ORF4370P (58% identity) | S2.Lsa12574ORF7730P | |
| 7760 | PTS sugar transporter subunit IIC | |||
| plasmid unnamed2 | ||||
| 9020 | 80 aa hypothetical protein | |||
| 9025 | M | M.LsaH1ORF770P (98% identity) | M.Lsa12574ORF9025P | |
| 9030 | S | S.LsaRenORF1873P (98% identity) | S.Lsa12574ORF9025P | |
| 9035 | site-specific integrase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1475 | 94 aa hypothetical protein | |||
| 1485 | RM | LsaRenORF458P (100% identity) | Lsa12574ORF1485P | |
| 1490 | M | LkeM1ORF1865P (13% identity) | M1.Lsa12574ORF1485P | |
| ??? | M | M1.LsaRenORF458P (99% identity) | M2.Lsa12574ORF1485P | |
| 1495 | dipeptidase PepV | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5690 | 60 aa hypothetical protein | |||
| 5695 | M | M.Lsa3154ORF1480P (99% identity) | M.Lsa12574ORF5695P | |
| 5700 | R | Lsa3154ORF1480P (98% identity) | Lsa12574ORF5695P | |
| 5705 | 430 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5175 | protein-tyrosine-phosphatase | |||
| 5180 | R | LsaSGL03ORF410P (99% identity) | Lsa12574ORF5180P | |
| 5185 | IMP dehydrogenase | |||
| 5670 | 0 aa hypothetical protein | |||
| 5675 | R | LsaDJMcrBP (98% identity) | Lsa12574McrBP | |
| 5680 | R | LsaDJMcrCP (94% identity) | Lsa12574McrCP | |
| 5685 | 296 aa hypothetical protein | |||