Ref: Park,M.-K. et al. unpublished

REBASE ref # 24736

Sequence length:GenBank #:
Chromosome: 2,956,605 bp CP017697
plasmid pLDW-4: 75,101 bp CP017698
plasmid pLDW-5: 61,336 bp CP017699
plasmid pLDW-7: 15,010 bp CP017701

REBASE acronym: Lco3535

Org_num: 25961

 

All begin LC20004_

Type I
ORF Gene Most similar Specificity Name
 
plasmid pLDW-4
 
14305 302 aa hypothetical protein
14310 R Lba1992IP (98% identity) GAGNNNNNTANNG Lco3535IP
14315 S S.Lco3167ORFFP (74% identity) GAGNNNNNTANNG S.Lco3535I
14320 M M.Lbr1106ORF30P (99% identity) GAGNNNNNTANNG M.Lco3535I
14325 restriction endonuclease
 
plasmid pLDW-5
 
14660 IS30 family transposase
14665 R Lpl048ORFBP (98% identity) TAATNNNNNGTC Lco3535IIP
14670 M M.Lpl3418ORF15255P (98% identity) TAATNNNNNGTC M.Lco3535II
14675 S S.Ppe620ORF10145P (64% identity) TAATNNNNNGTC S.Lco3535II
14680 374 aa hypothetical protein
 
plasmid pLDW-7
 
15015 RepB-like protein
15020 R Lco3167ORFCP (100% identity) Lco3535ORF15025P
15025 M M.Lco3167ORFCP (100% identity) M.Lco3535ORF15025P
15030 S S.Lci101ORF785P (62% identity) S.Lco3535ORF15025P
15035 addiction module toxin RelE
 
15060 RepB-like protein
15005 R Lco3535ORF15025P (60% identity) Lco3535ORF15005P
Type II
ORF Gene Most similar Specificity Name
 
Chromosome
 
810 1202 aa hypothetical protein
815 RM Lco3616ORF3555P (47% identity) Lco3535ORF815P
820 TIGR02687 family protein
 
3615 73 aa hypothetical protein
3620 M M.Lre565ORF196P (84% identity) M.Lco3535ORF3620P
3625 97 aa hypothetical protein
 
5010 62 aa hypothetical protein
5015 M M.BspUORFHP (67% identity) M.Lco3535ORF5015P
5020 76 aa hypothetical protein
 
8355 423 aa hypothetical protein
8360 R R1.LsaC22GORF5920P (35% identity) Lco3535ORF8370P
8365 303 aa hypothetical protein
8370 M M1.Lin6629ORF6250P (67% identity) CCTC M1.Lco3535ORF8370P
??? M M2.Pgl10507ORF25P (61% identity) CCTC M2.Lco3535ORF8370P
8380 C transcriptional regulator C.Lco3535ORF8370P
8385 transposase
 
8395 transposase
8400 M M.LrhY39ORF6045P (61% identity) M.Lco3535ORF8400P
8405 652 aa hypothetical protein
 
13310 128 aa hypothetical protein
13315 RM Lcu1928ORF10760P (96% identity) Lco3535ORF13315P
13320 transcriptional regulator
 
13370 268 aa hypothetical protein
13375 RM Lpa401ORF8260P (82% identity) Lco3535ORF13375P
13380 IS30 family transposase