Lactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 |
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Putative Lactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 RM systems
Ref: Park,M.-K. et al. unpublished
REBASE ref # 24736
| Sequence length: | GenBank #: | |
| Chromosome: | 2,956,605 bp | CP017697 |
| plasmid pLDW-4: | 75,101 bp | CP017698 |
| plasmid pLDW-5: | 61,336 bp | CP017699 |
| plasmid pLDW-7: | 15,010 bp | CP017701 |
REBASE acronym: Lco3535
Org_num: 25961
All begin LC20004_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid pLDW-4 | ||||
| 14305 | 302 aa hypothetical protein | |||
| 14310 | R | Lba1992IP (98% identity) | GAGNNNNNTANNG | Lco3535IP |
| 14315 | S | S.Lco3167ORFFP (74% identity) | GAGNNNNNTANNG | S.Lco3535I |
| 14320 | M | M.Lbr1106ORF30P (99% identity) | GAGNNNNNTANNG | M.Lco3535I |
| 14325 | restriction endonuclease | |||
| plasmid pLDW-5 | ||||
| 14660 | IS30 family transposase | |||
| 14665 | R | Lpl048ORFBP (98% identity) | TAATNNNNNGTC | Lco3535IIP |
| 14670 | M | M.Lpl3418ORF15255P (98% identity) | TAATNNNNNGTC | M.Lco3535II |
| 14675 | S | S.Ppe620ORF10145P (64% identity) | TAATNNNNNGTC | S.Lco3535II |
| 14680 | 374 aa hypothetical protein | |||
| plasmid pLDW-7 | ||||
| 15015 | RepB-like protein | |||
| 15020 | R | Lco3167ORFCP (100% identity) | Lco3535ORF15025P | |
| 15025 | M | M.Lco3167ORFCP (100% identity) | M.Lco3535ORF15025P | |
| 15030 | S | S.Lci101ORF785P (62% identity) | S.Lco3535ORF15025P | |
| 15035 | addiction module toxin RelE | |||
| 15060 | RepB-like protein | |||
| 15005 | R | Lco3535ORF15025P (60% identity) | Lco3535ORF15005P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 810 | 1202 aa hypothetical protein | |||
| 815 | RM | Lco3616ORF3555P (47% identity) | Lco3535ORF815P | |
| 820 | TIGR02687 family protein | |||
| 3615 | 73 aa hypothetical protein | |||
| 3620 | M | M.Lre565ORF196P (84% identity) | M.Lco3535ORF3620P | |
| 3625 | 97 aa hypothetical protein | |||
| 5010 | 62 aa hypothetical protein | |||
| 5015 | M | M.BspUORFHP (67% identity) | M.Lco3535ORF5015P | |
| 5020 | 76 aa hypothetical protein | |||
| 8355 | 423 aa hypothetical protein | |||
| 8360 | R | R1.LsaC22GORF5920P (35% identity) | Lco3535ORF8370P | |
| 8365 | 303 aa hypothetical protein | |||
| 8370 | M | M1.Lin6629ORF6250P (67% identity) | CCTC | M1.Lco3535ORF8370P |
| ??? | M | M1.BsuO121ORF4185P (61% identity) | CCTC | M2.Lco3535ORF8370P |
| 8380 | C | transcriptional regulator | C.Lco3535ORF8370P | |
| 8385 | transposase | |||
| 8395 | transposase | |||
| 8400 | M | M.LrhsA5ORFDP (61% identity) | M.Lco3535ORF8400P | |
| 8405 | 652 aa hypothetical protein | |||
| 13310 | 128 aa hypothetical protein | |||
| 13315 | RM | LplJ50ORF445P (96% identity) | Lco3535ORF13315P | |
| 13320 | transcriptional regulator | |||
| 13370 | 268 aa hypothetical protein | |||
| 13375 | RM | Lpa401ORF8260P (82% identity) | Lco3535ORF13375P | |
| 13380 | IS30 family transposase | |||