Ref: Laine,P.K.S. unpublished

REBASE ref # 21841

Sequence length:GenBank #:
chromosome I: 3,032,477 bp LT576785
chromosome I: 3,044,937 bp LT576786
chromosome I: 3,432,872 bp LT576784

REBASE acronym: Pac278

Org_num: 26337

 

All begin PAPP_278_, PAPP_279_, PAPP_280_

Type I
ORF Gene Most similar Specificity Name
 
chromosome I
 
684 Glutamate decarboxylase
685 R Type I site-specific deoxyribonuclease, HsdR Aac279ORF687P
686 S specificity protein s S.Aac279ORF687P
687 M Type I restriction/modification system DNA M.Aac279ORF687P
688 681 aa Hypothetical protein
 
chromosome I
 
1519 85 aa Hypothetical protein
1520 M HsdM N-terminal domain protein (Fragment) M.Aac280ORF1520P
1521 ISMsm3 transposase
 
2073 671 aa Hypothetical protein
2074 M Type I restriction/modification system DNA GAAYNNNNNTGG M.Aac280ORF2074P
2075 S Restriction modification system DNA specificity GAAYNNNNNTGG S.Aac280ORF2074P
2076 R Type I site-specific deoxyribonuclease, HsdR GAAYNNNNNTGG Aac280ORF2074P
2077 206 aa Hypothetical protein
 
chromosome I
 
2509 N-6 DNA methylase
2510 M M.AviJS278I (1% identity) TTGANNNNNNTGC M.Pac278ORF2510P
2511 S S.AviJS278I (1% identity) TTGANNNNNNTGC S.Pac278ORF2510P
2512 R AviJS278IP (1% identity) TTGANNNNNNTGC Pac278ORF2510P
2513 251 aa Hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
chromosome I
 
356 Negative regulator of genetic competence
357 M C-5 cytosine-specific DNA methylase M.Aac279ORF357P
358 V DNA mismatch endonuclease V.Aac279ORF357P
359 R Endonuclease, Z1 domain-containing protein Aac279ORF357P
360 PF14390 domain protein
 
1937 DNA repair ATPase
1938 M restriction enzyme M.Aac279ORF1938P
1939 Type II restriction enzyme, methylase
 
2427 RM Type II restriction enzyme, methylase subunit Aac279ORF2427P
2428 Conserved domain protein
 
chromosome I
 
2395 84 aa Hypothetical protein
2396 M Type III restriction system methylase M1.Aac280ORF2396P
2397 M Eco57I restriction endonuclease M2.Aac280ORF2396P
2398 RM restriction enzyme Aac280ORF2396P
2399 278 aa Hypothetical protein
 
2489 RM Type II restriction enzyme, methylase subunit Aac280ORF2489P
2490 Helicase domain protein
 
chromosome I
 
665 Quaternary ammonium resistance protein
666 M M.AviJS278ORF670P (0% identity) M.Pac278ORF666P
667 V V.AviJS278ORF670P (0% identity) V.Pac278ORF666P
668 R AviJS278ORF670P (0% identity) Pac278ORF666P
669 PF14390 domain protein
 
783 223 aa Hypothetical protein
??? M M.AviJS278ORF790P (1% identity) M.Pac278ORF784P
786 880 aa Hypothetical protein
 
811 84 aa Hypothetical protein
812 M M1.AviJS278ORF819P (1% identity) M1.Pac278ORF812P
813 M M2.AviJS278ORF819P (1% identity) M2.Pac278ORF812P
814 RM AviJS278ORF819P (1% identity) Pac278ORF812P
815 PF03235 family protein
 
1640 Helicase SNF2 family protein
1641 RM AviJS278ORF1667P (0% identity) Pac278ORF1641P
1642 Genome sequencing data, contig C317
 
2304 Two-component system response regulator
2305 R AviJS278IIP (1% identity) CTCGAG Pac278ORF2306P
2306 M M.AviJS278II (1% identity) CTCGAG M.Pac278ORF2306P
2307 Glyceraldehyde 3-phosphate dehydrogenase gap
 
2928 RM AviJS278ORF2979P (1% identity) Pac278ORF2928P
2929 Helicase domain protein
Type III
ORF Gene Most similar Specificity Name
 
chromosome I
 
1510 ISMsm3 transposase
1511 R DNA restriction-modification system, Aac280ORF1512P
1512 M type III DNA modification methylase M.Aac280ORF1512P
1513 95 aa Hypothetical protein
 
chromosome I
 
1948 ATP-dependent endonuclease of the OLD
1949 R AviJS278ORF1983P (1% identity) Pac278ORF1950P
1950 M M.AviJS278ORF1983P (1% identity) M.Pac278ORF1950P
1951 Transcriptional regulator, TetR family
Type IV
ORF Gene Most similar Specificity Name
 
chromosome I
 
2431 80 aa Hypothetical protein
2432 R McrBC 5-methylcytosine restriction system Aac279McrCP
2433 R GTPase subunit of restriction endonuclease Aac279McrBP
2434 416 aa Hypothetical protein
 
2434 416 aa Hypothetical protein
2435 R McrBC restriction endonuclease system Aac279McrB2P
2436 R 5-methylcytosine-specific restriction enzyme Aac279McrC2P
2437 Uncharacterized conserved protein UCP016719
 
chromosome I
 
2492 80 aa Hypothetical protein
2493 R McrBC 5-methylcytosine restriction system Aac280McrCP
2494 R GTPase subunit of restriction endonuclease Aac280McrBP
2495 416 aa Hypothetical protein
 
2495 416 aa Hypothetical protein
2496 R McrBC restriction endonuclease system Aac280McrB2P
2497 R 5-methylcytosine-specific restriction enzyme Aac280McrC2P
2498 BioY family protein