Acidipropionibacterium acidipropionici isolate PAPP280 |
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Putative Acidipropionibacterium acidipropionici isolate PAPP280 RM systems
Ref: Laine,P.K.S. unpublished
REBASE ref # 21841
| Sequence length: | GenBank #: | |
| chromosome I: | 3,032,477 bp | LT576785 |
| chromosome I: | 3,432,872 bp | LT576784 |
| chromosome I: | 3,044,937 bp | LT576786 |
REBASE acronym: Pac278
Org_num: 26337
All begin PAPP_278_, PAPP_279_, PAPP_280_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 684 | Glutamate decarboxylase | |||
| 685 | R | AjeJS279ORF3425P (95% identity) | Aac279ORF687P | |
| 686 | S | S.AjeJS279ORF3425P (96% identity) | S.Aac279ORF687P | |
| 687 | M | M.AjeJS279ORF3425P (100% identity) | M.Aac279ORF687P | |
| 688 | 681 aa Hypothetical protein | |||
| chromosome I | ||||
| 2509 | N-6 DNA methylase | |||
| 2510 | M | M.AviJS278I (100% identity) | TTGANNNNNNTGC | M.Pac278ORF2510P |
| 2511 | S | S.AviJS278I (100% identity) | TTGANNNNNNTGC | S.Pac278ORF2510P |
| 2512 | R | AviJS278IP (100% identity) | TTGANNNNNNTGC | Pac278ORF2510P |
| 2513 | 251 aa Hypothetical protein | |||
| chromosome I | ||||
| 1519 | 85 aa Hypothetical protein | |||
| 1520 | M | HsdM N-terminal domain protein (Fragment) | M.Aac280ORF1520P | |
| 1521 | ISMsm3 transposase | |||
| 2073 | 671 aa Hypothetical protein | |||
| 2074 | M | M.AjeJS280I (100% identity) | GAAYNNNNNTGG | M.Aac280ORF2074P |
| 2075 | S | S.AjeJS280I (100% identity) | GAAYNNNNNTGG | S.Aac280ORF2074P |
| 2076 | R | AjeJS280IP (99% identity) | GAAYNNNNNTGG | Aac280ORF2074P |
| 2077 | 206 aa Hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 356 | Negative regulator of genetic competence | |||
| 357 | M | M.AjeJS279I (95% identity) | M.Aac279ORF357P | |
| 358 | V | V.AjeJS279IP (89% identity) | V.Aac279ORF357P | |
| 359 | R | AjeJS279IP (90% identity) | Aac279ORF357P | |
| 360 | PF14390 domain protein | |||
| 1937 | DNA repair ATPase | |||
| 1938 | M | PfrP1ORF12000P (36% identity) | M.Aac279ORF1938P | |
| 1939 | Type II restriction enzyme, methylase | |||
| 2427 | RM | AjeJS279ORF12355P (90% identity) | Aac279ORF2427P | |
| 2428 | Conserved domain protein | |||
| chromosome I | ||||
| 665 | Quaternary ammonium resistance protein | |||
| 666 | M | M.AviJS278ORF670P (98% identity) | M.Pac278ORF666P | |
| 667 | V | V.AviJS278ORF670P (89% identity) | V.Pac278ORF666P | |
| 668 | R | AviJS278ORF670P (98% identity) | Pac278ORF666P | |
| 669 | PF14390 domain protein | |||
| 783 | 223 aa Hypothetical protein | |||
| ??? | M | M.AviJS278ORF790P (100% identity) | M.Pac278ORF784P | |
| 786 | 880 aa Hypothetical protein | |||
| 811 | 84 aa Hypothetical protein | |||
| 812 | M | M1.AviJS278ORF819P (100% identity) | M1.Pac278ORF812P | |
| 813 | M | M2.AviJS278ORF819P (100% identity) | M2.Pac278ORF812P | |
| 814 | RM | AviJS278ORF819P (100% identity) | Pac278ORF812P | |
| 815 | PF03235 family protein | |||
| 1640 | Helicase SNF2 family protein | |||
| 1641 | RM | AviJS278ORF1667P (96% identity) | Pac278ORF1641P | |
| 1642 | Genome sequencing data, contig C317 | |||
| 2304 | Two-component system response regulator | |||
| 2305 | R | AviJS278IIP (100% identity) | CTCGAG | Pac278ORF2306P |
| 2306 | M | M.AviJS278II (100% identity) | CTCGAG | M.Pac278ORF2306P |
| 2307 | Glyceraldehyde 3-phosphate dehydrogenase gap | |||
| 2928 | RM | AviJS278ORF2979P (100% identity) | Pac278ORF2928P | |
| 2929 | Helicase domain protein | |||
| chromosome I | ||||
| 2395 | 84 aa Hypothetical protein | |||
| 2396 | M | M1.AjeJS280ORF12185P (100% identity) | M1.Aac280ORF2396P | |
| 2397 | M | M2.Pac55737ORF325P (100% identity) | M2.Aac280ORF2396P | |
| 2398 | RM | AjeJS280ORF12185P (100% identity) | Aac280ORF2396P | |
| 2399 | 278 aa Hypothetical protein | |||
| 2489 | RM | AjeJS280ORF12645P (100% identity) | Aac280ORF2489P | |
| 2490 | Helicase domain protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 1948 | ATP-dependent endonuclease of the OLD | |||
| 1949 | R | AviJS278ORF1983P (100% identity) | Pac278ORF1950P | |
| 1950 | M | M.AviJS278ORF1983P (100% identity) | M.Pac278ORF1950P | |
| 1951 | Transcriptional regulator, TetR family | |||
| chromosome I | ||||
| 1510 | ISMsm3 transposase | |||
| 1511 | R | AjeJS280ORF7665P (100% identity) | Aac280ORF1512P | |
| 1512 | M | M.AjeJS280ORF7665P (100% identity) | M.Aac280ORF1512P | |
| 1513 | 95 aa Hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome I | ||||
| 2431 | 80 aa Hypothetical protein | |||
| 2432 | R | AjeJS279McrCP (100% identity) | Aac279McrCP | |
| 2433 | R | Aje13652McrBP (98% identity) | Aac279McrBP | |
| 2434 | 416 aa Hypothetical protein | |||
| 2434 | 416 aa Hypothetical protein | |||
| 2435 | R | Aje13652McrB2P (99% identity) | Aac279McrB2P | |
| 2436 | R | AjeJS279McrC2P (100% identity) | Aac279McrC2P | |
| 2437 | Uncharacterized conserved protein UCP016719 | |||
| chromosome I | ||||
| 2492 | 80 aa Hypothetical protein | |||
| 2493 | R | AjeJS280McrCP (100% identity) | Aac280McrCP | |
| 2494 | R | Aje13652McrBP (98% identity) | Aac280McrBP | |
| 2495 | 416 aa Hypothetical protein | |||
| 2495 | 416 aa Hypothetical protein | |||
| 2496 | R | Aje13652McrB2P (99% identity) | Aac280McrB2P | |
| 2497 | R | AjeJS280McrC2P (100% identity) | Aac280McrC2P | |
| 2498 | BioY family protein | |||