Ref: Strnad,H. et al. unpublished

REBASE ref # 11810

Complete sequence: 3,738,958 bp

GenBank #: CP001312 (NC_014034)

REBASE acronym: RcaSB

Org_num: 5986

 

All begin RCAP_rcc

Type I
ORF Gene Most similar Specificity Name
 
950 phage integrase
951 R RcaY262ORF5965P (1% identity) RcaSBORF952P
952 M M.RcaY262ORF5965P (1% identity) M.RcaSBORF952P
953 308 aa conserved hypothetical protein
954 S S.RcaY262ORF5965P (1% identity) S.RcaSBORF952P
955 SMC protein, N-terminal domain protein
 
1323 transposase, IS66 family
1324 R RcaY262ORF8005P (1% identity) RcaSBORF1325P
1325 M M.RcaY262ORF8005P (1% identity) M.RcaSBORF1325P
1326 S S.RcaY262ORF8005P (1% identity) S.RcaSBORF1325P
1327 312 aa conserved hypothetical protein
 
1927 219 aa conserved hypothetical protein
1928 R RcaY262ORF11125P (1% identity) RcaSBORF1930P
1929 S S.RcaY262ORF11125P (1% identity) S.RcaSBORF1930P
1930 M M.RcaY262ORF11125P (1% identity) M.RcaSBORF1930P
1931 resolvase family protein
Type II
ORF Gene Most similar Specificity Name
 
200 transcriptional regulator, MarR family
201 M M.RcaYW1ORF1750P (1% identity) GANTC M.RcaSBORF201P
202 ribonuclease HII
 
942 234 aa conserved hypothetical protein
943 M M1.RcaY262ORF5920P (1% identity) M.RcaSBORF943P
944 ParB domain protein nuclease
 
943 site-specific DNA-methyltransferase
944 M M2.RcaY262ORF5920P (1% identity) M.RcaSBORF944P
945 173 aa conserved hypothetical protein
 
2002 115 aa conserved hypothetical protein
2003 M M.RcaY262ORF11510P (1% identity) M.RcaSBORF2003P
2004 conserved domain protein
 
2716 510 aa conserved hypothetical protein, ATPase
2717 M M.RcaY262ORF15125P (1% identity) AGCT M.RcaSBORF2717P
2718 127 aa conserved hypothetical protein
 
2739 396 aa conserved hypothetical protein
??? M M1.RcaY262ORF15245P (1% identity) M1.RcaSBORF2740P
2742 M M2.RcaY262ORF15245P (1% identity) M2.RcaSBORF2740P
2744 sulfate/thiosulfate ABC transporter, periplasmic
Type III
ORF Gene Most similar Specificity Name
 
1259 361 aa conserved hypothetical protein
1260 M M.RcaY262ORF7715P (1% identity) M.RcaSBORF1260P
1261 R RcaY262ORF7715P (1% identity) RcaSBORF1260P
1262 recombinase
Type IV
ORF Gene Most similar Specificity Name
 
1285 transcriptional regulator, GntR family
1286 R RcaY262McrBP (1% identity) RcaSBMcrBP
1287 R RcaY262McrCP (1% identity) RcaSBMcrCP
1288 240 aa hypothetical protein
 
3121 58 aa hypothetical protein
3122 R RcaY262McrB2P (1% identity) RcaSBMcrB2P
3123 GTP-binding protein LepA