Rhodobacter capsulatus SB1003 |
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Putative Rhodobacter capsulatus SB1003 RM systems
Ref: Strnad,H. et al. unpublished
REBASE ref # 11810
Complete sequence: 3,738,958 bp
GenBank #: CP001312 (NC_014034)
REBASE acronym: RcaSB
Org_num: 5986
All begin RCAP_rcc
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 950 | phage integrase | |||
| 951 | R | RcaY262ORF5965P (100% identity) | RcaSBORF952P | |
| 952 | M | M.RcaY262ORF5965P (100% identity) | M.RcaSBORF952P | |
| 953 | 308 aa conserved hypothetical protein | |||
| 954 | S | S.RcaY262ORF5965P (100% identity) | S.RcaSBORF952P | |
| 955 | SMC protein, N-terminal domain protein | |||
| 1323 | transposase, IS66 family | |||
| 1324 | R | RcaY262ORF8005P (100% identity) | RcaSBORF1325P | |
| 1325 | M | M.RcaY262ORF8005P (100% identity) | M.RcaSBORF1325P | |
| 1326 | S | S.RcaY262ORF8005P (100% identity) | S.RcaSBORF1325P | |
| 1327 | 312 aa conserved hypothetical protein | |||
| 1927 | 219 aa conserved hypothetical protein | |||
| 1928 | R | RcaY262ORF11125P (100% identity) | RcaSBORF1930P | |
| 1929 | S | S.RcaY262ORF11125P (100% identity) | S.RcaSBORF1930P | |
| 1930 | M | M.RcaY262ORF11125P (100% identity) | M.RcaSBORF1930P | |
| 1931 | resolvase family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 200 | transcriptional regulator, MarR family | |||
| 201 | M | M.RcaYW1ORF1750P (100% identity) | GANTC | M.RcaSBORF201P |
| 202 | ribonuclease HII | |||
| 942 | 234 aa conserved hypothetical protein | |||
| 943 | M | M1.RcaY262ORF5920P (100% identity) | M.RcaSBORF943P | |
| 944 | ParB domain protein nuclease | |||
| 943 | site-specific DNA-methyltransferase | |||
| 944 | M | M2.RcaY262ORF5920P (100% identity) | M.RcaSBORF944P | |
| 945 | 173 aa conserved hypothetical protein | |||
| 2002 | 115 aa conserved hypothetical protein | |||
| 2003 | M | site-specific DNA-methyltransferase | M.RcaSBORF2003P | |
| 2004 | conserved domain protein | |||
| 2716 | 510 aa conserved hypothetical protein, ATPase | |||
| 2717 | M | M.RcaY262ORF15125P (100% identity) | AGCT | M.RcaSBORF2717P |
| 2718 | 127 aa conserved hypothetical protein | |||
| 2739 | 396 aa conserved hypothetical protein | |||
| ??? | M | M1.RcaY262ORF15245P (100% identity) | M1.RcaSBORF2740P | |
| 2742 | M | M2.RcaY262ORF15245P (100% identity) | M2.RcaSBORF2740P | |
| 2744 | sulfate/thiosulfate ABC transporter, periplasmic | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1259 | 361 aa conserved hypothetical protein | |||
| 1260 | M | M.RcaY262ORF7715P (100% identity) | M.RcaSBORF1260P | |
| 1261 | R | RcaY262ORF7715P (100% identity) | RcaSBORF1260P | |
| 1262 | recombinase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1285 | transcriptional regulator, GntR family | |||
| 1286 | R | RcaY262McrBP (100% identity) | RcaSBMcrBP | |
| 1287 | R | RcaY262McrCP (100% identity) | RcaSBMcrCP | |
| 1288 | 240 aa hypothetical protein | |||
| 3121 | 58 aa hypothetical protein | |||
| 3122 | R | RcaY262McrB2P (100% identity) | RcaSBMcrB2P | |
| 3123 | GTP-binding protein LepA | |||