Shigella flexneri 1c Y394 |
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Putative Shigella flexneri 1c Y394 RM systems
Ref: Parajuli,P. et al. BMC Genomics 18 (1), 722 (2017)
REBASE ref # 25250
| Sequence length: | GenBank #: | |
| Chromosome: | 4,584,634 bp | CP020753 |
| plasmid pINV-Y394: | 221,293 bp | CP030773 |
REBASE acronym: Sfl394
Org_num: 26243
All begin B7485_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 24415 | endoribonuclease SymE | |||
| 24420 | S | S.SflPE577ORF23095P (100% identity) | GTANNNNNNNNGTCY | S.Sfl394I |
| 24425 | M | M.SspS13ORF3945P (100% identity) | GTANNNNNNNNGTCY | M.Sfl394I |
| 24430 | R | SflTORF4636P (100% identity) | GTANNNNNNNNGTCY | Sfl394IP |
| 24435 | IS1 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 11300 | drug/metabolite exporter YedA | |||
| 11305 | V | V.SflTDcmP (100% identity) | V.Sfl394DcmP | |
| 11310 | M | M.SflTDcmP (100% identity) | CCWGG | M.Sfl394DcmP |
| 11315 | phosphohydrolase | |||
| 18400 | DNA-binding transcriptional regulator Fis | |||
| 18405 | M | M.SflTORF3517P (100% identity) | ATGCAT | M.Sfl394ORF18405P |
| 18410 | DUF2556 domain-containing protein | |||
| 18995 | ribulose-phosphate 3-epimerase | |||
| 19000 | M | M.SflTDamP (100% identity) | GATC | M.Sfl394Dam |
| 19005 | cell division protein DamX | |||
| plasmid pINV-Y394 | ||||
| 26475 | 0 aa hypothetical protein | |||
| 26480 | M | M.SflP099ORF24190P (100% identity) | M.Sfl394ORF26480P | |
| 26485 | 73 aa hypothetical protein | |||