Pseudodesulfovibrio profundus 500-1 |
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Putative Pseudodesulfovibrio profundus 500-1 RM systems
Ref: Regsiter,A. and William,W. unpublished
REBASE ref # 24235
Complete sequence: 4,168,905 bp
GenBank #: LT907975
REBASE acronym: Ppr5001
Org_num: 26214
All begin DPRO_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 613 | DNA binding domain protein, excisionase family | |||
| 614 | M | M.PspZM2ORF1220P (97% identity) | M.Ppr5001ORF614P | |
| 615 | S | S.DdeGORF1861P (57% identity) | S1.Ppr5001ORF614P | |
| 616 | S | protein of unknown function | S2.Ppr5001ORF614P | |
| 617 | R | PspZM2ORF1220P (95% identity) | Ppr5001ORF614P | |
| 618 | conserved membrane protein of unknown function | |||
| 1036 | conserved protein of unknown function | |||
| 1037 | S | S.LspC1B70ORF7740P (49% identity) | S.Ppr5001ORF1038P | |
| 1038 | M | M.Psp415ORF10245P (78% identity) | M.Ppr5001ORF1038P | |
| 1039 | protein of unknown function | |||
| 1040 | R | Dde132ORFAP (68% identity) | Ppr5001ORF1038P | |
| 1041 | protein of unknown function | |||
| 3225 | conserved protein of unknown function | |||
| 3226 | R | DpiV30ORF12245P (93% identity) | Ppr5001ORF3231P | |
| 3227 | S | S.Psp12ORF2751P (39% identity) | S1.Ppr5001ORF3231P | |
| 3228 | conserved protein of unknown function | |||
| ??? | S | S.AbaTW7ORF3492P (13% identity) | S2.Ppr5001ORF3231P | |
| 3229 | Virulence protein | |||
| 3230 | conserved membrane protein of unknown function | |||
| 3231 | M | M.DpiV30ORF12245P (91% identity) | M.Ppr5001ORF3231P | |
| 3232 | protein of unknown function | |||
| 3576 | conserved protein of unknown function | |||
| 3577 | R | Rsa22694ORF5200P (62% identity) | Ppr5001ORF3580P | |
| 3578 | conserved protein of unknown function | |||
| 3579 | S | S.Eba13ORF20615P (40% identity) | S.Ppr5001ORF3580P | |
| 3580 | M | M.DvuRCH1ORF1586P (83% identity) | M.Ppr5001ORF3580P | |
| 3581 | Type I restriction modification DNA | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 99 | Integrase catalytic region | |||
| ??? | V | V.CliKPSORF251P (35% identity) | V.Ppr5001ORFAP | |
| ??? | M | M.Mko45378ORF19250P (45% identity) | M.Ppr5001ORFAP | |
| 101 | conserved protein of unknown function | |||
| 315 | conserved protein of unknown function | |||
| 316 | RM | conserved protein of unknown function | Ppr5001ORF316CP | |
| 317 | transposase | |||
| 318 | Integrase catalytic region | |||
| 319 | RM | DbaSRB2ORF59P (21% identity) | Ppr5001ORF316BP | |
| 320 | RM | Dma1ORF36140P (32% identity) | Ppr5001ORF316AP | |
| 321 | conserved protein of unknown function | |||
| 485 | conserved protein of unknown function | |||
| 486 | M | M.SfuMORF3806P (99% identity) | M.Ppr5001ORF486P | |
| 487 | conserved protein of unknown function | |||
| 527 | conserved protein of unknown function | |||
| 528 | M | M.DnoVCSORF180P (46% identity) | M.Ppr5001ORF528P | |
| 529 | protein of unknown function | |||
| 573 | protein of unknown function | |||
| 574 | M | M.DbaKORF1816P (93% identity) | M.Ppr5001ORF574P | |
| 576 | conserved protein of unknown function | |||
| 2058 | Integrase catalytic region | |||
| 2059 | RM | BspD4ORF3166P (51% identity) | Ppr5001ORF2059P | |
| 2060 | conserved protein of unknown function | |||
| 2945 | conserved protein of unknown function | |||
| 2946 | RM | N-6 DNA methylase | Ppr5001ORF2946P | |
| 2948 | transposase | |||
| 3632 | Transcriptional activator Ogr/delta (fragment) | |||
| 3633 | M | M.Dgi1382ORF2361P (54% identity) | M.Ppr5001ORF3633P | |
| 3634 | conserved protein of unknown function | |||
| 3684 | protein of unknown function | |||
| 3685 | M | M.DmaCS1ORF20005P (48% identity) | M.Ppr5001ORF3685P | |
| 3686 | protein of unknown function | |||
| 3686 | protein of unknown function | |||
| 3687 | M | M.TphTJE1ORFAP (21% identity) | M.Ppr5001ORF3687P | |
| 3688 | protein of unknown function | |||
| 3735 | transposase | |||
| 3736 | M | M.Dol6ORF3195P (83% identity) | M.Ppr5001ORF3736P | |
| 3737 | Transcriptional regulator | |||
| 3738 | protein of unknown function | |||
| 3739 | M | M.DspJ2ORF3470P (85% identity) | M.Ppr5001ORF3739P | |
| 3740 | Helix-turn-helix domain protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1163 | ATP/GTP-binding protein | |||
| 1164 | R | Adi293ORF644P (66% identity) | Ppr5001ORF1165P | |
| 1165 | M | M.DspN47ORF42960P (13% identity) | M.Ppr5001ORF1165P | |
| 1167 | transposase | |||