Pseudoalteromonas species 1_2015MBL_MicDiv |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Pseudoalteromonas species 1_2015MBL_MicDiv RM systems
Ref: Krause,D.J. et al. unpublished
REBASE ref # 25239
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,952,635 bp | CP012737 |
| chromosome 2: | 907,248 bp | CP012738 |
REBASE acronym: PspMD
Org_num: 26216
All begin AOR04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 11855 | pseudogene | |||
| 11860 | R | PalEH1IIIP (96% identity) | PspMDORF11880P | |
| 11865 | hydroxyacid dehydrogenase | |||
| 11870 | S | S.Eae35II (75% identity) | S.PspMDORF11880P | |
| 11875 | 348 aa hypothetical protein | |||
| 11880 | M | M.Psp125ORF2319P (94% identity) | M.PspMDORF11880P | |
| 11885 | restriction endonuclease | |||
| chromosome 2 | ||||
| 18235 | ferredoxin | |||
| 18240 | M | M.PspG3ORF22925P (96% identity) | M.PspMDORF18240P | |
| 18245 | 197 aa hypothetical protein | |||
| 18250 | ATP-dependent DNA helicase | |||
| 18255 | S | S.PpeSED14ORF525P (58% identity) | S.PspMDORF18240P | |
| 18260 | 201 aa hypothetical protein | |||
| 18265 | 376 aa hypothetical protein | |||
| 18270 | R | Psp20495ORF4336P (98% identity) | PspMDORF18240P | |
| 18275 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1845 | malate dehydrogenase | |||
| 1850 | R | SspR2A3ORF9040P (57% identity) | PspMDORF1855P | |
| 1855 | M | M.SspR2A3ORF9040P (73% identity) | M.PspMDORF1855P | |
| 1860 | transcriptional regulator | |||
| 1915 | cell division protein DamX | |||
| 1920 | M | M.Psp20495DamP (100% identity) | M.PspMDDamP | |
| 1925 | 99 aa hypothetical protein | |||
| 5335 | transposase | |||
| 5340 | R | RnaE4078ORF1786P (79% identity) | PspMDORF5345P | |
| 5345 | M | M.Ssp2012ORF4082P (75% identity) | M.PspMDORF5345P | |
| 5350 | transposase | |||
| chromosome 2 | ||||
| 17935 | pseudogene | |||
| 17940 | M | M.VspF100ORF660P (70% identity) | M.PspMDORF17940P | |
| 17945 | 795 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 11880 | restriction endonuclease subunit M | |||
| 11885 | R | Psp20495ORF2760P (97% identity) | PspMDORF11885P | |
| 11890 | 541 aa hypothetical protein | |||