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Putative Allochromatium vinosum DSM 180 RM systems
Ref: Lucas,S. et al. unpublished
REBASE ref # 11548
Sequence length: | GenBank #: | |
Chromosome: | 3,526,903 bp | CP001896 (NC_013851) |
plasmid pALVIN01: | 102,242 bp | CP001897 (NC_013852) |
plasmid pALVIN02: | 39,929 bp | CP001898 (NC_013862) |
REBASE acronym: Avi180
Org_num: 5829
All begin Alvin_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
plasmid pALVIN01 | ||||
3174 | 304 aa conserved hypothetical protein | |||
3175 | R | TboBBSORF18100P (74% identity) | Avi180ORF3176P | |
3176 | M | M.Rla166ORF15865P (73% identity) | M.Avi180ORF3176P | |
3177 | S | S.AinAB2ORF7495P (41% identity) | S.Avi180ORF3176P | |
3178 | 303 aa hypothetical protein | |||
plasmid pALVIN02 | ||||
3258 | PilT protein-like protein | |||
3259 | M | M.Msp14BORFBP (86% identity) | M.Avi180ORF3259P | |
3260 | 74 aa conserved hypothetical protein | |||
3261 | PilT protein domain protein | |||
3262 | S | S.Sme4ORF590P (35% identity) | S.Avi180ORF3259P | |
3263 | 75 aa hypothetical protein | |||
3264 | virulence protein, putative | |||
3265 | PilT protein domain protein | |||
3266 | R | MspW1ORF12750P (80% identity) | Avi180ORF3259P | |
3267 | integration host factor, beta subunit | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
177 | ribosomal protein S9 | |||
178 | RM | Xor142ORF10765P (79% identity) | Avi180ORF178P | |
179 | DEAD-like helicase | |||
1459 | protein of unknown function DUF262 | |||
1460 | R | Tfr970ORF4504P (78% identity) | GTCGAC | Avi180ORF1461P |
1461 | M | M.Tfr970ORF4504P (83% identity) | GTCGAC | M.Avi180ORF1461P |
1462 | secretion protein HlyD family protein | |||
1612 | YcfA family protein | |||
1613 | R | Dma2077ORF72750P (58% identity) | CCTNAGG | Avi180ORF1614P |
1614 | M | M.Dma2077ORF72750P (41% identity) | CCTNAGG | M.Avi180ORF1614P |
1615 | 479 aa hypothetical protein | |||
2593 | stress protein | |||
2594 | M | M.AteNZORF25860P (67% identity) | CTCGAG | M.Avi180ORF2594P |
2595 | 144 aa conserved hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
1537 | glycosyl transferase family 2 | |||
1538 | M | M.CbaCRORF1343P (63% identity) | M.Avi180ORF1538P | |
1539 | 387 aa conserved hypothetical protein | |||
1540 | 199 aa conserved hypothetical protein | |||
1541 | R | Tta22826ORF8080P (79% identity) | Avi180ORF1538P | |
1542 | glycosyl transferase family 39 | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
2955 | 548 aa hypothetical protein | |||
2956 | R | 728 aa conserved hypothetical protein | Avi180McrBP | |
2957 | Chromosome segregation ATPase-like protein |