Escherichia coli DS1 |
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Putative Escherichia coli DS1 RM systems
Ref: Canas-Duarte,S.J. et al. unpublished
REBASE ref # 24918
Complete sequence: 4,567,805 bp
GenBank #: CP022466
REBASE acronym: EcoDS1
Org_num: 25375
All begin DS1UA2014_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 410 | 113 aa hypothetical protein | |||
| 415 | S | S.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | S.EcoDS1ORF420P |
| 420 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.EcoDS1ORF420P |
| ??? | R | Msa17ORFC2P (100% identity) | AACNNNNNNGTGC | EcoDS1ORF420P |
| 430 | Mrr restriction system protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10820 | drug/metabolite exporter YedA | |||
| 10825 | V | V.SflFF64DcmP (100% identity) | V.EcoDS1DcmP | |
| 10830 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoDS1DcmP |
| 10835 | phosphohydrolase | |||
| 11350 | 101 aa hypothetical protein | |||
| 11355 | M | M.SflN92ORF24820P (100% identity) | M.EcoDS1ORF11355P | |
| 11360 | 73 aa hypothetical protein | |||
| 18370 | Fis family transcriptional regulator | |||
| 18375 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.EcoDS1ORF18375P |
| 18380 | transporter | |||
| 19170 | ribulose-phosphate 3-epimerase | |||
| 19175 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoDS1DamP |
| 19180 | protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 395 | 906 aa hypothetical protein | |||
| 400 | R | SenHNK130McrCP (100% identity) | EcoDS1McrCP | |
| 405 | R | SenHNK130McrBP (100% identity) | EcoDS1McrBP | |
| 410 | 113 aa hypothetical protein | |||
| ??? | Type I restriction enzyme EcoKI R protein | |||
| 430 | R | SenHNK130MrrP (100% identity) | EcoDS1MrrP | |
| 435 | GTPase | |||