Clostridioides difficile DH/NAP11/106/ST-42 |
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Putative Clostridioides difficile DH/NAP11/106/ST-42 RM systems
Ref: Kociolek,L.K. et al. unpublished
REBASE ref # 25681
Complete sequence: 4,087,127 bp
GenBank #: CP022524
REBASE acronym: CdiST42
Org_num: 25372
All begin CGC51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15620 | DUF262 domain-containing protein | |||
| ??? | R | CdiEW53IP (100% identity) | CANNNNNNNTAAAG | CdiST42ORF15650P |
| 15630 | 142 aa hypothetical protein | |||
| 15635 | nucleotidyltransferase domain-containing | |||
| 15640 | 102 aa hypothetical protein | |||
| 15645 | S | S.Pdi9689II (100% identity) | CANNNNNNNTAAAG | S.CdiST42ORF15650P |
| 15650 | M | M.Pdi9689II (100% identity) | CANNNNNNNTAAAG | M.CdiST42ORF15650P |
| 15655 | ketose-bisphosphate aldolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2535 | 0 aa hypothetical protein | |||
| 2540 | C | C.PdiZ31ORF415P (100% identity) | C.CdiST42ORF2540P | |
| ??? | N-6 DNA Methylase | |||
| 2540 | XRE family transcriptional regulator | |||
| ??? | RM | Cdo002IV (100% identity) | GCMGAAG | CdiST42ORF2545P |
| 2550 | 224 aa hypothetical protein | |||
| 14290 | phospholipase | |||
| 14295 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.CdiST42ORF14295P |
| 14300 | Rrf2 family transcriptional regulator | |||
| 16030 | LytTR family transcriptional regulator | |||
| 16035 | M | M.CdiCd24DndCP (100% identity) | M.CdiST42DndCP | |
| 16040 | DNA sulfur modification protein DndD | |||
| 16035 | sulfurtransferase DndC | |||
| 16040 | M | M.CdiCd24DndDP (100% identity) | M.CdiST42DndDP | |
| 16045 | DUF1832 domain-containing protein | |||
| 16045 | DUF1832 domain-containing protein | |||
| ??? | R | CdiCd21DptHP (100% identity) | CdiST42DptHP | |
| 16060 | DNA phosphorothioation-dependent restriction | |||
| ??? | hypothetical protein | |||
| 16060 | R | CdiCd21DptGP (100% identity) | CdiST42DptGP | |
| 16065 | DNA phosphorothioation-dependent restriction | |||
| 16060 | DNA phosphorothioation-dependent restriction | |||
| 16065 | R | CdiCd21DptFP (100% identity) | CdiST42DptFP | |
| 16070 | 90 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10545 | AAA family ATPase | |||
| 10550 | R | Cdo002McrCP (100% identity) | CdiST42McrCP | |
| 10555 | R | Pdi6602McrBP (100% identity) | CdiST42McrBP | |
| 10560 | cell division protein | |||