Helicobacter pylori SV397_2 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori SV397_2 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,661,035 bp
GenBank #: MTWS00000000 (NZ_MTWS00000000)
REBASE acronym: Hpy397
Org_num: 24025
All begin BZK22_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2745 | 631 aa hypothetical protein | |||
| 2750 | R | HpyP007XP (90% identity) | Hpy397ORF2755P | |
| 2755 | M | M.HpyCOL118ORF2185P (96% identity) | M.Hpy397ORF2755P | |
| 2760 | S | S.HpyPO02ORF4325P (98% identity) | S.Hpy397ORF2755P | |
| 2765 | 0 aa hypothetical protein | |||
| 5915 | phosphatase PAP2 family protein | |||
| 5925 | M | M.HpyU416ORF4300P (98% identity) | M.Hpy397ORF5925P | |
| 5930 | S | S.HpyBG7ORF2445P (96% identity) | S.Hpy397ORF5925P | |
| 5935 | 0 aa hypothetical protein | |||
| 5940 | R | HpyU417XIIP (98% identity) | Hpy397ORF5925P | |
| 5945 | hydroxyethylthiazole kinase | |||
| 500 | cag pathogenicity island protein | |||
| 505 | S | S.HpyKA1ORF7040P (96% identity) | S.Hpy397ORF510P | |
| 510 | M | M.HpyU305VI (96% identity) | M.Hpy397ORF510P | |
| 515 | R | HpyU102VIP (94% identity) | Hpy397ORF510P | |
| 520 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6225 | DNA methyltransferase | |||
| 6230 | M | M.HpyU413VI (99% identity) | GANTC | M.Hpy397ORF6230P |
| ??? | R | HpyU302VIP (98% identity) | GANTC | Hpy397ORF6230P |
| 6245 | peptidase S41 | |||
| 3835 | M | M.Hpyfe16ORF3735P (98% identity) | M.Hpy397ORF3835P | |
| 3840 | R | HpyT004ORF4005P (100% identity) | Hpy397ORF3835P | |
| 3845 | 499 aa hypothetical protein | |||
| 7605 | catalase | |||
| 7610 | R | Hpy5009ORF7990P (100% identity) | ACGT | Hpy397ORF7615P |
| 7615 | M | M.HpyCOL113ORF2285P (99% identity) | ACGT | M.Hpy397ORF7615P |
| 7620 | restriction endonuclease | |||
| 7615 | DNA (cytosine-5-)-methyltransferase | |||
| 7620 | R | HpyCOL113IIP (99% identity) | ACNGT | Hpy397ORF7625P |
| 7625 | M | M.Hpy449ORF7930P (100% identity) | ACNGT | M.Hpy397ORF7625P |
| 7630 | GTP-binding protein TypA | |||
| 7470 | 3-5 exonuclease | |||
| 7475 | M | M.HpyU408ORF3030P (99% identity) | M.Hpy397ORF7475P | |
| 7480 | R | HpyNG19ORF4430P (97% identity) | Hpy397ORF7475P | |
| 7485 | acetone carboxylase subunit gamma | |||
| 7635 | glycosyltransferase 9 family protein | |||
| 7640 | M | M.HpyDO1II (97% identity) | ATTAAT | M.Hpy397ORF7635P |
| 5480 | flagellar hook protein FlgE | |||
| 5485 | R | HpyU004ORF4455P (96% identity) | GTNNAC | Hpy397ORF5490P |
| 5490 | M | M.HpyU311X (98% identity) | GTNNAC | M.Hpy397ORF5490P |
| 5495 | ATP-dependent DNA helicase | |||
| 8040 | nicotinate-nucleotide diphosphorylase | |||
| 8045 | RM | Hpy5AEK1ORFLP (83% identity) | Hpy397ORF8045P | |
| 7715 | purine-nucleoside phosphorylase | |||
| 7720 | R | 115 aa hypothetical protein | TCNGA | Hpy397ORF7725P |
| 7725 | M | M.HpyU408X (100% identity) | TCNGA | M.Hpy397ORF7725P |
| 7730 | 0 aa hypothetical protein | |||
| 5605 | 270 aa hypothetical protein | |||
| 5610 | RM | HpyPU009ORF2935P (91% identity) | Hpy397ORF5610P | |
| 5615 | glycerol-3-phosphate dehydrogenase | |||
| 5235 | flagellar biosynthesis protein FlgM | |||
| 5240 | M | M.HpyU432XIII (98% identity) | M.Hpy397ORF5240P | |
| 5245 | 144 aa hypothetical protein | |||
| 165 | DNA polymerase I | |||
| 170 | S | S.HpyH024ORF6870P (94% identity) | S.Hpy397ORF175P | |
| 175 | RM | HpyGH3ORF6715P (96% identity) | Hpy397ORF175P | |
| 180 | amidophosphoribosyltransferase | |||
| 4405 | Laminin subunit alpha-2 precursor | |||
| 4410 | R | HpyBR19ORF5295P (98% identity) | Hpy397ORF4415P | |
| 4415 | M | M.HpyPE116XI (99% identity) | M.Hpy397ORF4415P | |
| 4420 | methyltransferase | |||
| 4985 | IceA2 protein | |||
| 4990 | M | M.HpyCOL208I (99% identity) | CATG | M.Hpy397ORF4990P |
| 4995 | hydrolase | |||
| 400 | 176 aa hypothetical protein | |||
| 405 | RM | HpyBR7ORF6715P (90% identity) | Hpy397ORF405P | |
| 410 | 34 aa hypothetical protein | |||
| 595 | 68 aa hypothetical protein | |||
| 600 | M | M.Hpy5009ORF1100P (100% identity) | TGCA | M.Hpy397ORF600P |
| 605 | R | Hpy328ORF3010P (98% identity) | TGCA | Hpy397ORF600P |
| 610 | anthranilate synthase component I | |||
| 1895 | alpha-1,2-fucosyltransferase | |||
| 1900 | M | M.HpyCA2VIII (97% identity) | GATC | M.Hpy397ORF1900P |
| 1905 | 333 aa hypothetical protein | |||
| 2105 | sodium/proline symporter | |||
| 2110 | R | HpyDO5IVP (95% identity) | Hpy397ORF2115P | |
| 2115 | DNA (cytosine-5-)-methyltransferase | |||
| 2120 | M | M2.HpyCOL318IIP (100% identity) | CCTC | M2.Hpy397ORF2115P |
| 2125 | agmatine deiminase | |||
| 3640 | ATP-dependent chaperone ClpB | |||
| 3645 | M | M.HpySP702II (99% identity) | CCGG | M.Hpy397ORF3645P |
| 3650 | R | Hpy5009ORF2130P (99% identity) | Hpy397ORF3645P | |
| 3655 | 204 aa hypothetical protein | |||
| 3655 | 204 aa hypothetical protein | |||
| 3660 | M | M.HpyBR2XI (98% identity) | TCGA | M.Hpy397ORF3660P |
| 3665 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8060 | 0 aa hypothetical protein | |||
| 8065 | R | HpySWT06XIVP (89% identity) | Hpy397ORF8065P | |
| 8070 | DNA methylase | |||
| 8065 | restriction endonuclease | |||
| 8070 | M | M.HpyPO18ORF6630P (93% identity) | M.Hpy397ORF8070P | |
| 8075 | endonuclease | |||
| 8130 | rod shape-determining protein MreC | |||
| 8135 | R | HpySP609ORF7500P (90% identity) | Hpy397ORF8140P | |
| ??? | M | M.HpyU203ORF6755P (95% identity) | M.Hpy397ORF8140P | |
| 415 | 0 aa hypothetical protein | |||
| 420 | R | HpyZ011ORF7155P (96% identity) | Hpy397ORF425P | |
| ??? | M | M.HpyKH1ORFNP (95% identity) | M.Hpy397ORF425P | |
| 435 | ATP-dependent DNA helicase RecG | |||