Helicobacter pylori SV355_2 |
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Putative Helicobacter pylori SV355_2 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,629,002 bp
GenBank #: MTWQ00000000 (NZ_MTWQ00000000)
REBASE acronym: Hpy355
Org_num: 24022
All begin BZK23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1430 | 631 aa hypothetical protein | |||
| 1435 | R | HpyC22ORF2130P (93% identity) | Hpy355ORF1440P | |
| 1440 | M | M.HpyPO12ORF2135P (97% identity) | M.Hpy355ORF1440P | |
| 1445 | S | S.HpyU415ORF2150P (97% identity) | S.Hpy355ORF1440P | |
| 1450 | 0 aa hypothetical protein | |||
| 4600 | 499 aa hypothetical protein | |||
| 4605 | S | S.HpySW16ORF3445P (99% identity) | S.Hpy355ORF4605P | |
| 4610 | cadmium-translocating P-type ATPase | |||
| 3595 | thymidylate synthase (FAD) | |||
| 3600 | S | S.HpyG004ORF6685P (97% identity) | S.Hpy355ORF3610P | |
| 3605 | CAAX protease | |||
| 3610 | M | M.HpyKG3XV (95% identity) | M.Hpy355ORF3610P | |
| 3615 | R | HpyCOL211VIIP (94% identity) | Hpy355ORF3610P | |
| 3620 | metal-dependent hydrolase | |||
| 4890 | hydroxyethylthiazole kinase | |||
| 4895 | R | HpyCOL104ORF3955P (96% identity) | Hpy355ORF4905P | |
| 4900 | S | S.HpySP14XII (97% identity) | S.Hpy355ORF4905P | |
| 4905 | M | M.HpyC004ORF4065P (88% identity) | M.Hpy355ORF4905P | |
| 4910 | phosphatase PAP2 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7950 | R | HpyCOL122VIP (99% identity) | GAAGA | Hpy355ORF7955P |
| 7955 | M | M1.HpyCOL204VI (99% identity) | GAAGA | M.Hpy355ORF7955P |
| 7960 | site-specific DNA-methyltransferase | |||
| 7955 | site-specific DNA-methyltransferase | |||
| 7960 | M | M2.HpyG004X (100% identity) | GAAGA | M.Hpy355ORF7960P |
| 7965 | response regulator | |||
| 7840 | peptidase S41 | |||
| 7845 | R | Hpy29ORF6845P (96% identity) | GANTC | Hpy355ORF7850P |
| 7850 | M | M.HpyAR1XI (99% identity) | GANTC | M.Hpy355ORF7850P |
| ??? | hypothetical protein | |||
| 7445 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 7450 | M | M.HpyU420VI (100% identity) | GAATTC | M.Hpy355ORF7450P |
| 7455 | R | HpyU420VIP (98% identity) | GAATTC | Hpy355ORF7450P |
| 7460 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 7850 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyME06ORF6610P (85% identity) | Hpy355ORF7855P | |
| 7865 | nicotinate-nucleotide diphosphorylase | |||
| 395 | Laminin subunit alpha-2 precursor | |||
| 400 | R | HpyH020XP (100% identity) | TCNNGA | Hpy355ORF405P |
| 405 | M | M.HpyPE113XIII (99% identity) | TCNNGA | M.Hpy355ORF405P |
| 410 | methyltransferase | |||
| 7665 | 144 aa hypothetical protein | |||
| 7670 | M | M.HpyNCI39ORFC1P (100% identity) | GCGC | M.Hpy355ORF7670P |
| 7675 | flagellar biosynthesis protein FlgM | |||
| 3040 | ATP-dependent DNA helicase | |||
| 3045 | M | M.HpyPO103ORF3330P (96% identity) | GTNNAC | M.Hpy355ORF3045P |
| 3050 | R | HpySP315XP (96% identity) | GTNNAC | Hpy355ORF3045P |
| 3055 | flagellar hook protein FlgE | |||
| 3295 | DNA polymerase I | |||
| 3300 | S | S.HpyMT5124ORF7100P (66% identity) | S.Hpy355ORF3305P | |
| 3305 | RM | HpyCRI2XIV (98% identity) | Hpy355ORF3305P | |
| 3310 | amidophosphoribosyltransferase | |||
| 185 | 94 aa hypothetical protein | |||
| 190 | M | M.HpyPE112I (100% identity) | CATG | M.Hpy355ORF190P |
| 195 | hydrolase | |||
| 7230 | acetone carboxylase subunit gamma | |||
| 7235 | R | HpyPE17ORF3810P (98% identity) | CCNNGG | Hpy355ORF7240P |
| 7240 | M | M.HpyPOR114IV (95% identity) | CCNNGG | M.Hpy355ORF7240P |
| 7245 | 3-5 exonuclease | |||
| 7000 | 0 aa hypothetical protein | |||
| 7005 | M | M.HpySP318XIV (100% identity) | TCNGA | M.Hpy355ORF7005P |
| ??? | R | HpyF17I (100% identity) | TCNGA | Hpy355ORF7005P |
| 7015 | purine-nucleoside phosphorylase | |||
| 3990 | elongation factor P | |||
| 3995 | M | M.HpyKH27ORFMP (98% identity) | M.Hpy355ORF3995P | |
| 4000 | 92 aa hypothetical protein | |||
| 7315 | 0 aa hypothetical protein | |||
| 7320 | RM | HpyBR18ORF3215P (82% identity) | Hpy355ORF7320P | |
| 7325 | glycerol-3-phosphate dehydrogenase | |||
| 3515 | 69 aa hypothetical protein | |||
| 3520 | RM | HpyB14ORF7305P (87% identity) | Hpy355ORF3520P | |
| 3525 | 34 aa hypothetical protein | |||
| 5945 | agmatine deiminase | |||
| 5950 | M | M1.HpyC82XI (98% identity) | CCTC | M1.Hpy355ORF5950P |
| 5955 | M | M2.HpyCOL318IIP (100% identity) | CCTC | M2.Hpy355ORF5950P |
| 5960 | R | HpyDO5IVP (99% identity) | Hpy355ORF5950P | |
| 5965 | DNA cytosine methyltransferase | |||
| 1890 | 92 aa hypothetical protein | |||
| 1895 | M | M.HpyH012ORF1710P (100% identity) | M.Hpy355ORF1895P | |
| 1900 | elongation factor 4 | |||
| 3695 | 68 aa hypothetical protein | |||
| 3700 | M | M.HpyPE111IX (98% identity) | TGCA | M.Hpy355ORF3700P |
| 3705 | R | HpyKG10XP (93% identity) | TGCA | Hpy355ORF3700P |
| 3710 | anthranilate synthase component I | |||
| 6160 | malonyl CoA-acyl carrier protein transacylase | |||
| 6170 | R | Hpy5009ORF4295P (99% identity) | GATC | Hpy355ORF6175P |
| 6175 | M | M.Hpy5009ORF4295P (99% identity) | GATC | M.Hpy355ORF6175P |
| 6180 | alpha-1,2-fucosyltransferase | |||
| 1230 | 406 aa hypothetical protein | |||
| 1235 | R | HpyZ004IXP (99% identity) | GTAC | Hpy355ORF1240P |
| 1240 | M | M.HpyC122VIII (98% identity) | GTAC | M.Hpy355ORF1240P |
| 1245 | DNA gyrase subunit B | |||
| 1330 | catalase | |||
| 1335 | M | M.HpyBR25ORF4480P (80% identity) | ACGT | M.Hpy355ORF1335P |
| 1340 | restriction endonuclease | |||
| 1335 | DNA cytosine methyltransferase | |||
| 1340 | R | HpyNP06IIP (99% identity) | ACNGT | Hpy355ORF1345P |
| 1345 | M | M.HpyU403II (98% identity) | ACNGT | M.Hpy355ORF1345P |
| 1350 | GTP-binding protein TypA | |||
| 1355 | glycosyltransferase 9 family protein | |||
| 1360 | M | M.HpyPE105III (97% identity) | ATTAAT | M.Hpy355ORF1360P |
| 2315 | ATP-dependent chaperone ClpB | |||
| 2320 | M | M.HpyU418II (98% identity) | CCGG | M.Hpy355ORF2320P |
| 2325 | R | HpySP318ORF1305P (79% identity) | CCGG | Hpy355ORF2320P |
| 2330 | 69 aa hypothetical protein | |||
| 2330 | 69 aa hypothetical protein | |||
| 2335 | M | M.HpyME09X (98% identity) | TCGA | M.Hpy355ORF2335P |
| 2340 | exodeoxyribonuclease VII large subunit | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7965 | response regulator | |||
| ??? | M | M.HpyU437ORF7375P (75% identity) | M.Hpy355ORF7970P | |
| 7980 | R | HpyC127ORF7750P (94% identity) | Hpy355ORF7970P | |
| 7985 | rod shape-determining protein MreC | |||
| 8040 | endonuclease | |||
| ??? | M | Hpy5009ORF7100P (54% identity) | M.Hpy355ORF8045P | |
| 8050 | R | M.Hpy355ORF8045P (53% identity) | Hpy355ORF8045P | |
| 8060 | 0 aa hypothetical protein | |||
| 3525 | 34 aa hypothetical protein | |||
| ??? | R | HpyCOL118ORF7665P (93% identity) | Hpy355ORF3535P | |
| ??? | M | M.HpySWT14ORF7110P (96% identity) | M.Hpy355ORF3535P | |
| 3545 | ATP-dependent DNA helicase RecG | |||