Helicobacter pylori SV340_2 |
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Putative Helicobacter pylori SV340_2 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,626,272 bp
GenBank #: MTWP00000000 (NZ_MTWP00000000)
REBASE acronym: Hpy340
Org_num: 24021
All begin BZK20_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1900 | 499 aa hypothetical protein | |||
| ??? | S | S.HpyCO5ORF3790P (97% identity) | S.Hpy340ORF1905P | |
| 1910 | CAAX protease | |||
| 6495 | RNA degradosome polyphosphate kinase | |||
| 6505 | S | S.HpyI020ORF5275P (85% identity) | S.Hpy340ORF6510P | |
| 6510 | M | M.HpyBR7ORF2160P (97% identity) | M.Hpy340ORF6510P | |
| 6515 | R | Hpy908ORF455P (92% identity) | Hpy340ORF6510P | |
| 6520 | 631 aa hypothetical protein | |||
| 2195 | hydroxyethylthiazole kinase | |||
| 2200 | R | HpyJ99bORF2750P (96% identity) | Hpy340ORF2210P | |
| 2205 | S | S.HpyKH9ORFVP (97% identity) | S.Hpy340ORF2210P | |
| 2210 | M | M.HpyCOL301XV (97% identity) | M.Hpy340ORF2210P | |
| 2215 | DNA (cytosine-5-)-methyltransferase | |||
| 900 | metal-dependent hydrolase | |||
| 905 | R | HpySP405ORF7080P (96% identity) | Hpy340ORF910P | |
| 910 | M | M.HpyU416III (66% identity) | M.Hpy340ORF910P | |
| 915 | S | S.HpyME23ORF7335P (96% identity) | S.Hpy340ORF910P | |
| 920 | 59 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7115 | 65 aa hypothetical protein | |||
| 7120 | M | M.HpyU302II (99% identity) | ATTAAT | M.Hpy340ORF7120P |
| 7125 | 264 aa hypothetical protein | |||
| 7135 | GTP-binding protein TypA | |||
| 7140 | M | M.Hpy449ORF7930P (100% identity) | ACNGT | M.Hpy340ORF7140P |
| 7145 | R | HpyLIM3ORF2260P (99% identity) | ACNGT | Hpy340ORF7140P |
| 7150 | DNA (cytosine-5-)-methyltransferase | |||
| 4375 | 144 aa hypothetical protein | |||
| 4380 | M | M.HpyBR13XI (96% identity) | GCGC | M.Hpy340ORF4380P |
| 4385 | flagellar biosynthesis protein FlgM | |||
| 7145 | restriction endonuclease | |||
| 7150 | M | M.HpyPOR113ORF2240P (98% identity) | ACGT | M.Hpy340ORF7150P |
| 7155 | R | Hpy5005ORF8020P (98% identity) | Hpy340ORF7150P | |
| 7160 | catalase | |||
| 7420 | flagellar hook protein FlgE | |||
| 7425 | R | HpyNG17IXP (97% identity) | GTNNAC | Hpy340ORF7430P |
| 7430 | M | M.HpyPOR112VIII (97% identity) | GTNNAC | M.Hpy340ORF7430P |
| 7435 | ATP-dependent DNA helicase | |||
| 1505 | Laminin subunit alpha-2 precursor | |||
| 1510 | R | HpyKH43ORFAP (100% identity) | TCNNGA | Hpy340ORF1515P |
| 1515 | M | M.HpyU414XI (99% identity) | TCNNGA | M.Hpy340ORF1515P |
| 1520 | acetyl-CoA carboxylase biotin carboxylase | |||
| 6690 | hydrolase | |||
| 6695 | M | M.HpySP606I (97% identity) | CATG | M.Hpy340ORF6695P |
| ??? | R | HpyR03IP (95% identity) | Hpy340ORF6695P | |
| 6705 | serine O-acetyltransferase | |||
| 6065 | elongation factor 4 | |||
| 6070 | M | M.HpyH012ORF1710P (100% identity) | M.Hpy340ORF6070P | |
| 6075 | 93 aa hypothetical protein | |||
| 3465 | 406 aa hypothetical protein | |||
| 3470 | R | HpyBR18VIIIP (97% identity) | GTAC | Hpy340ORF3475P |
| 3475 | M | M.HpyLIM6VII (99% identity) | GTAC | M.Hpy340ORF3475P |
| 3480 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2560 | alpha-1,2-fucosyltransferase | |||
| 2565 | M | M.HpyI008IX (97% identity) | GATC | M.Hpy340ORF2565P |
| 2570 | R | HpyCOL103VIIP (97% identity) | GATC | Hpy340ORF2565P |
| 2580 | [acyl-carrier-protein] S-malonyltransferase | |||
| 4255 | 270 aa hypothetical protein | |||
| 4260 | RM | HpyC004ORF3190P (90% identity) | Hpy340ORF4260P | |
| 4265 | glycerol-3-phosphate dehydrogenase | |||
| 2760 | type II restriction endonuclease | |||
| 2765 | R | HpySA50ORF1883P (99% identity) | GTSAC | Hpy340ORF2770P |
| 2770 | M | M.HpyPE116IX (100% identity) | GTSAC | M.Hpy340ORF2770P |
| 2780 | restriction endonuclease | |||
| 2770 | site-specific DNA-methyltransferase | |||
| 2780 | M | M2.HpyPU010VP (95% identity) | M2.Hpy340ORF2780P | |
| 2785 | M | M1.HpyU302IV (98% identity) | CCTC | M1.Hpy340ORF2780P |
| 2790 | agmatine deiminase | |||
| 745 | peptidase S41 | |||
| 750 | R | HpyH011IIIP (95% identity) | GANTC | Hpy340ORF755P |
| 755 | M | M.HpyCOL118VIII (99% identity) | GANTC | M.Hpy340ORF755P |
| 760 | DNA methyltransferase | |||
| 755 | DNA methyltransferase | |||
| 760 | RM | HpyP009ORF6470P (91% identity) | Hpy340ORF760P | |
| 765 | nicotinate-nucleotide diphosphorylase | |||
| 4965 | exodeoxyribonuclease VII large subunit | |||
| 4970 | M | M.HpyH015XIV (97% identity) | TCGA | M.Hpy340ORF4970P |
| 4975 | 158 aa hypothetical protein | |||
| 4975 | 158 aa hypothetical protein | |||
| 4980 | R | HpyH004VP (96% identity) | Hpy340ORF4985P | |
| 4985 | M | M.HpyLIM9ORF1315P (98% identity) | M.Hpy340ORF4985P | |
| 4990 | ATP-dependent chaperone ClpB | |||
| 2210 | type I restriction-modification system subunit | |||
| 2215 | M | M.HpySP312ORF4340P (100% identity) | M.Hpy340ORF2215P | |
| 2220 | R | HpyU433ORF4085P (99% identity) | Hpy340ORF2215P | |
| 2225 | phosphatase PAP2 family protein | |||
| 990 | 95 aa hypothetical protein | |||
| 995 | RM | HpyME06ORF7305P (81% identity) | Hpy340ORF995P | |
| 1000 | 173 aa hypothetical protein | |||
| 1075 | 388 aa hypothetical protein | |||
| 1080 | R | HpyU001IIIP (99% identity) | CCATC | Hpy340ORF1085P |
| 1085 | M | M2.HpyU001III (100% identity) | CCATC | M2.Hpy340ORF1085P |
| 1090 | M | M1.HpyU001III (100% identity) | CCATC | M1.Hpy340ORF1085P |
| 1095 | permease | |||
| 3335 | glycosyl transferase 8 family protein | |||
| 3340 | M | M.HpyPO06ORF7325P (98% identity) | M.Hpy340ORF3340P | |
| 3345 | site-specific DNA-methyltransferase | |||
| 1220 | amidophosphoribosyltransferase | |||
| 1225 | RM | HpySP05ORF800P (98% identity) | Hpy340ORF1225P | |
| ??? | S | S.HpyPU007XIX (63% identity) | S1.Hpy340ORF1225P | |
| ??? | S | S1.HpyCRI5ORF7585P (56% identity) | S2.Hpy340ORF1225P | |
| 1235 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7750 | M | 162 aa hypothetical protein | M.Hpy340ORF7750P | |
| 7755 | R | HpyPOR109ORF6560P (92% identity) | Hpy340ORF7750P | |
| 7760 | rod shape-determining protein MreC | |||
| 7815 | endonuclease | |||
| 7820 | M | M.HpyC127XV (94% identity) | M.Hpy340ORF7820P | |
| 7825 | R | HpyCO8ORF7305P (96% identity) | Hpy340ORF7820P | |
| 7830 | type III restriction endonuclease subunit R | |||
| 975 | ATP-dependent DNA helicase RecG | |||
| 980 | M | M.Hpy4ORF7450P (97% identity) | M.Hpy340ORF980P | |
| 985 | R | HpyPOR113ORF6940P (95% identity) | Hpy340ORF980P | |
| 990 | 95 aa hypothetical protein | |||