Helicobacter pylori SV328_2 |
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Putative Helicobacter pylori SV328_2 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,639,514 bp
GenBank #: MTWO00000000 (NZ_MTWO00000000)
REBASE acronym: Hpy328
Org_num: 24020
All begin BZK21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7315 | type I restriction endonuclease subunit M | |||
| 7320 | S | restriction endonuclease subunit S | S.Hpy328ORF7320P | |
| 1550 | M | M.HpyCRI7III (95% identity) | M.Hpy328ORF1550P | |
| 1555 | restriction endonuclease subunit M | |||
| 4840 | R | HpySP108XIVP (95% identity) | Hpy328ORF4840P | |
| 4845 | hydroxyethylthiazole kinase | |||
| 5195 | 631 aa hypothetical protein | |||
| 5200 | R | Hpy2018ORF445P (91% identity) | Hpy328ORF5205P | |
| 5205 | M | M.HpyGCT56ORFA1P (97% identity) | M.Hpy328ORF5205P | |
| 5210 | S | S.HpyCOL307ORF2120P (99% identity) | S.Hpy328ORF5205P | |
| 5220 | RNA degradosome polyphosphate kinase | |||
| 2915 | cag pathogenicity island protein | |||
| 2920 | S | S.HpyC024II (62% identity) | S.Hpy328ORF2925P | |
| 2925 | M | M.HpyCH114ORF7655P (96% identity) | M.Hpy328ORF2925P | |
| 2930 | R | HpyPR02ORF7465P (95% identity) | Hpy328ORF2925P | |
| 2935 | metal-dependent hydrolase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6965 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 6970 | R | HpyU433ORF7630P (99% identity) | Hpy328ORF6975P | |
| 6975 | M | M.HpyLIM5ORF6640P (99% identity) | M.Hpy328ORF6975P | |
| 6980 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| 45 | acetyl-CoA carboxylase biotin carboxylase | |||
| 50 | M | M.HpyPE116XI (100% identity) | TCNNGA | M.Hpy328ORF50P |
| 55 | R | HpyPE104ORF5415P (98% identity) | Hpy328ORF50P | |
| 60 | Laminin subunit alpha-2 precursor | |||
| 2595 | DNA polymerase I | |||
| 2600 | S | S.HpyNCI39ORFVP (46% identity) | S.Hpy328ORF2605P | |
| 2605 | RM | HpyPE124ORF7330P (99% identity) | Hpy328ORF2605P | |
| 2610 | amidophosphoribosyltransferase | |||
| 5960 | 254 aa hypothetical protein | |||
| 5965 | R | HpyPU010XIP (64% identity) | GTAC | Hpy328ORF5970P |
| 5970 | M | M.HpyGT04IX (99% identity) | GTAC | M.Hpy328ORF5970P |
| 5975 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 6710 | 144 aa hypothetical protein | |||
| 6715 | M | M.HpyCOL2X (96% identity) | GCGC | M.Hpy328ORF6715P |
| 6720 | flagellar biosynthesis protein FlgM | |||
| 4755 | ATP-dependent DNA helicase | |||
| 4760 | M | M.Hpy5086ORF4570P (96% identity) | GTNNAC | M.Hpy328ORF4760P |
| ??? | R | HpyMT5118VIP (97% identity) | Hpy328ORF4760P | |
| 4770 | flagellar hook protein FlgE | |||
| 2230 | exodeoxyribonuclease VII large subunit | |||
| 2235 | M | M.Hpy355ORF2335P (98% identity) | TCGA | M.Hpy328ORF2235P |
| 2240 | 204 aa hypothetical protein | |||
| 5270 | 298 aa hypothetical protein | |||
| 5275 | C | C2.HpyU005IVP (98% identity) | C.Hpy328ORF5285P | |
| 5280 | R | HpySP308VIIP (100% identity) | Hpy328ORF5285P | |
| 5285 | M | M2.HpyME27ORF2110P (100% identity) | M1.Hpy328ORF5285P | |
| 5290 | M | M1.HpyT005ORF2145P (100% identity) | M2.Hpy328ORF5285P | |
| 5295 | transcriptional regulator | |||
| 1010 | nicotinate-nucleotide diphosphorylase | |||
| 1015 | RM | HpySP02ORF6405P (93% identity) | Hpy328ORF1015P | |
| 1020 | DNA methyltransferase | |||
| 1015 | DNA methyltransferase | |||
| 1020 | M | M.HpyCOL210IX (99% identity) | GANTC | M.Hpy328ORF1020P |
| 1025 | R | HpyME08VP (97% identity) | GANTC | Hpy328ORF1020P |
| 1030 | peptidase S41 | |||
| 2240 | 204 aa hypothetical protein | |||
| 2245 | R | endonuclease | CCGG | Hpy328ORF2250P |
| 2250 | M | M.Hpy5006ORF980P (100% identity) | CCGG | M.Hpy328ORF2250P |
| 2255 | ATP-dependent chaperone ClpB | |||
| 6060 | catalase | |||
| 6065 | M | M.HpySP310ORF2420P (45% identity) | ACGT | M.Hpy328ORF6065P |
| 6070 | restriction endonuclease | |||
| 6065 | DNA (cytosine-5-)-methyltransferase | |||
| 6070 | R | HpySP404IIP (99% identity) | ACNGT | Hpy328ORF6075P |
| 6075 | M | M.HpySP606II (99% identity) | ACNGT | M.Hpy328ORF6075P |
| 6080 | GTP-binding protein TypA | |||
| 6085 | glycosyltransferase 9 family protein | |||
| 6090 | M | M.HpySP710III (96% identity) | M.Hpy328ORF6090P | |
| 2735 | permease | |||
| 2740 | M | M1.HpyPR08III (100% identity) | CCATC | M1.Hpy328ORF2740P |
| 2745 | M | M1.HpySP201III (98% identity) | CCATC | M2.Hpy328ORF2740P |
| 2750 | R | HpySP305IIP (96% identity) | CCATC | Hpy328ORF2740P |
| 2755 | 388 aa hypothetical protein | |||
| 4185 | glycerol-3-phosphate dehydrogenase | |||
| 4190 | RM | HpyPU009ORF2935P (90% identity) | Hpy328ORF4190P | |
| 4195 | 0 aa hypothetical protein | |||
| 2835 | 179 aa hypothetical protein | |||
| 2840 | RM | HpyGE5ORF7190P (90% identity) | Hpy328ORF2840P | |
| 2845 | DEAD/DEAH box helicase | |||
| 4290 | 3-5 exonuclease | |||
| ??? | M | M.HpyC61ORFJP (76% identity) | M1.Hpy328ORF4295P | |
| 4300 | M | DNA modification methylase | M2.Hpy328ORF4295P | |
| 4305 | R | HpyMTT60ORFNP (99% identity) | CCNNGG | Hpy328ORF4295P |
| 4310 | acetone carboxylase subunit gamma | |||
| 740 | serine O-acetyltransferase | |||
| 745 | R | HpyCOL307IP (99% identity) | CATG | Hpy328ORF750P |
| 750 | M | M.HpyCOL309I (99% identity) | CATG | M.Hpy328ORF750P |
| 755 | hydrolase | |||
| 3005 | 68 aa hypothetical protein | |||
| 3010 | M | M.HpyC026VI (100% identity) | TGCA | M.Hpy328ORF3010P |
| 3015 | R | HpySP107VIIIP (93% identity) | TGCA | Hpy328ORF3010P |
| 3020 | translation elongation factor Ts | |||
| 3585 | agmatine deiminase | |||
| 3590 | M | M1.HpyME01VII (99% identity) | CCTC | M1.Hpy328ORF3590P |
| 3595 | M | M2.HpyPO18VIIIP (92% identity) | CCTC | M2.Hpy328ORF3590P |
| 3600 | restriction endonuclease | |||
| 3595 | restriction endonuclease | |||
| 3600 | R | HpyU203VP (98% identity) | CCTTC | Hpy328ORF3605P |
| 3605 | M | M.HpyH011VI (99% identity) | CCTTC | M.Hpy328ORF3605P |
| 3610 | sodium/proline symporter | |||
| 3825 | 324 aa hypothetical protein | |||
| 3830 | M | M.HpyU409IX (96% identity) | M.Hpy328ORF3830P | |
| 3835 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 870 | biotin synthase | |||
| 875 | R | Hpy5086ORF5620P (93% identity) | Hpy328ORF880P | |
| 880 | M | M.Hpy13094ORF1371P (95% identity) | M.Hpy328ORF880P | |
| 885 | endonuclease | |||
| 940 | rod shape-determining protein MreC | |||
| 945 | R | HpySP601ORF380P (93% identity) | Hpy328ORF945P | |
| 950 | site-specific DNA-methyltransferase | |||
| 945 | restriction endonuclease subunit R | |||
| ??? | M | M.HpyCOL108ORF6685P (95% identity) | M.Hpy328ORF950P | |
| 960 | two-component system response regulator | |||
| 2840 | restriction endonuclease | |||
| 2845 | R | HpyT010XIIIP (93% identity) | Hpy328ORF2850P | |
| ??? | M | M.HpyL022ORF7630P (96% identity) | M.Hpy328ORF2850P | |
| 2860 | ATP-dependent DNA helicase RecG | |||