Helicobacter pylori PZ5033_3A2 |
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Putative Helicobacter pylori PZ5033_3A2 RM systems
Ref: Pazos,A. et al. unpublished
REBASE ref # 24002
Contig set: 1,646,089 bp
GenBank #: MTWN00000000 (NZ_MTWN00000000)
REBASE acronym: Hpy5033
Org_num: 24019
All begin BZK27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 7260 | M | M.HpyCOL307ORF3990P (59% identity) | M.Hpy5033ORF7260P | |
| 7270 | phosphatase PAP2 family protein | |||
| 7970 | S | S.HpyL026XII (92% identity) | S.Hpy5033ORF7970P | |
| ??? | R | HpyGCT43ORF7170P (95% identity) | Hpy5033ORF5535P | |
| 5540 | hydroxyethylthiazole kinase | |||
| 1820 | 631 aa hypothetical protein | |||
| 1825 | R | HpyCH114ORF2565P (93% identity) | Hpy5033ORF1830P | |
| 1830 | M | M.HpySP510XVI (96% identity) | M.Hpy5033ORF1830P | |
| 1835 | S | S.HpySW15ORF2205P (98% identity) | S.Hpy5033ORF1830P | |
| 1845 | RNA degradosome polyphosphate kinase | |||
| 3535 | metal-dependent hydrolase | |||
| ??? | R | HpyPE13ORF6940P (94% identity) | Hpy5033ORF3550P | |
| 3550 | M | M.HpyKG1ORF7470P (93% identity) | M.Hpy5033ORF3550P | |
| 3555 | S | S.HpyG036ORF2560P (64% identity) | S.Hpy5033ORF3550P | |
| 3560 | S | 107 aa hypothetical protein | S2.Hpy5033ORF3550P | |
| 3565 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7655 | 92 aa hypothetical protein | |||
| 7660 | M | M.HpyU302II (98% identity) | ATTAAT | M.Hpy5033ORF7660P |
| 7665 | 264 aa hypothetical protein | |||
| 7975 | 0 aa hypothetical protein | |||
| 7980 | M | M.HpyPO06X (100% identity) | TCNGA | M.Hpy5033ORF7980P |
| 7985 | R | 115 aa hypothetical protein | Hpy5033ORF7980P | |
| 7990 | purine-nucleoside phosphorylase | |||
| 7675 | GTP-binding protein TypA | |||
| ??? | M | M.HpySP710II (94% identity) | ACNGT | M.Hpy5033ORF7680P |
| 7685 | R | HpyGCT43ORF7445P (99% identity) | ACNGT | Hpy5033ORF7680P |
| 7690 | DNA (cytosine-5-)-methyltransferase | |||
| 6135 | 144 aa hypothetical protein | |||
| 6140 | M | M.HpyI003XII (95% identity) | M.Hpy5033ORF6140P | |
| 6145 | flagellar biosynthesis protein FlgM | |||
| 7685 | restriction endonuclease | |||
| 7690 | M | M.HpyC024ORF2275P (100% identity) | ACGT | M.Hpy5033ORF7690P |
| ??? | R | HpyCOL108ORF2265P (81% identity) | ACGT | Hpy5033ORF7690P |
| 7700 | catalase | |||
| 7120 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 7125 | M | M.HpyF017XI (99% identity) | GTAC | M.Hpy5033ORF7125P |
| 7130 | R | HpyPE17XVIIIP (99% identity) | GTAC | Hpy5033ORF7125P |
| 7135 | 406 aa hypothetical protein | |||
| 4230 | Laminin subunit alpha-2 precursor | |||
| 4235 | R | HpyPE104ORF5415P (100% identity) | TCNNGA | Hpy5033ORFAP |
| ??? | M | M.Hpy5009ORFAP (100% identity) | TCNNGA | M.Hpy5033ORFAP |
| 4245 | acetyl-CoA carboxylase biotin carboxylase | |||
| 7845 | response regulator | |||
| 7850 | M | M1.HpyK114VIII (100% identity) | GAAGA | M1.Hpy5033ORF7850P |
| 7855 | M | HpyAR3ORF6560P (38% identity) | GAAGA | M2.Hpy5033ORF7850P |
| 7860 | R | HpySP322VIIP (97% identity) | GAAGA | Hpy5033ORF7850P |
| 940 | hydrolase | |||
| 945 | M | M.HpyMT5105I (99% identity) | CATG | M.Hpy5033ORF945P |
| 950 | R | HpyME24IP (95% identity) | CATG | Hpy5033ORF945P |
| 955 | serine O-acetyltransferase | |||
| 5915 | acetone carboxylase subunit gamma | |||
| 5920 | R | HpyPE17ORF3810P (99% identity) | CCNNGG | Hpy5033ORF5925P |
| 5925 | M | M.HpyCOL6ORF3290P (97% identity) | M.Hpy5033ORF5925P | |
| 5930 | 3-5 exonuclease | |||
| 3640 | 95 aa hypothetical protein | |||
| 3645 | RM | HpyF001XVIII (91% identity) | Hpy5033ORF3645P | |
| 3650 | 173 aa hypothetical protein | |||
| 6015 | 766 aa hypothetical protein | |||
| ??? | RM | HpyPE140ORF3175P (83% identity) | Hpy5033ORF6020P | |
| 6025 | glycerol-3-phosphate dehydrogenase | |||
| 7555 | flagellar hook protein FlgE | |||
| 7560 | R | HpySP322XP (96% identity) | GTNNAC | Hpy5033ORF7565P |
| 7565 | M | M.HpyCHN3VIII (96% identity) | GTNNAC | M.Hpy5033ORF7565P |
| 7570 | ATP-dependent DNA helicase | |||
| 3740 | 388 aa hypothetical protein | |||
| 3745 | R | HpyCA12IVP (98% identity) | CCATC | Hpy5033ORF3750P |
| 3750 | M | M1.HpyCOL6IV (98% identity) | M1.Hpy5033ORF3750P | |
| 3755 | M | M2.HpyCO4III (99% identity) | CCATC | M2.Hpy5033ORF3750P |
| 3760 | permease | |||
| 3885 | amidophosphoribosyltransferase | |||
| 3890 | RM | HpyCOL102ORF7050P (97% identity) | Hpy5033ORF3890P | |
| 3895 | S | S.HpyCO3ORF7000P (97% identity) | S.Hpy5033ORF3890P | |
| 3900 | DNA polymerase I | |||
| 5170 | agmatine deiminase | |||
| 5175 | M | M1.HpySP509V (97% identity) | CCTC | M1.Hpy5033ORF5175P |
| 5180 | M | M2.HpySP710ORF255P (100% identity) | M2.Hpy5033ORF5175P | |
| 5185 | R | HpyH013ORF265P (96% identity) | Hpy5033ORF5175P | |
| 5190 | DNA (cytosine-5-)-methyltransferase | |||
| 5185 | 88 aa hypothetical protein | |||
| 5190 | M | M.HpyCOL102VI (99% identity) | M.Hpy5033ORF5190P | |
| 5195 | sodium/proline symporter | |||
| 2460 | 125 aa hypothetical protein | |||
| 2465 | M | M.HpyU204VII (100% identity) | CTNAG | M.Hpy5033ORF2465P |
| 2470 | R | HpySP710IVP (100% identity) | Hpy5033ORF2465P | |
| 2475 | polysaccharide deacetylase | |||
| 5380 | malonyl CoA-acyl carrier protein transacylase | |||
| 5390 | R | HpyC023IVP (98% identity) | GATC | Hpy5033ORF5395P |
| 5395 | M | M.HpyC018IV (97% identity) | GATC | M.Hpy5033ORF5395P |
| 5400 | alpha-1,2-fucosyltransferase | |||
| 1680 | peptidase S41 | |||
| 1685 | R | HpyCOL6VIIIP (100% identity) | GANTC | Hpy5033ORF1690P |
| 1690 | M | M.HpyCOL118VIII (99% identity) | GANTC | M.Hpy5033ORF1690P |
| 1695 | DNA methyltransferase | |||
| 1690 | DNA methyltransferase | |||
| 1695 | RM | HpyS298ORF3680P (90% identity) | Hpy5033ORF1695P | |
| 1700 | nicotinate-nucleotide diphosphorylase | |||
| 2705 | ATP-dependent chaperone ClpB | |||
| 2710 | M | M.HpySWT06I (99% identity) | CCGG | M.Hpy5033ORF2710P |
| 2715 | R | 195 aa hypothetical protein | CCGG | Hpy5033ORF2710P |
| 2720 | 69 aa hypothetical protein | |||
| 2720 | 69 aa hypothetical protein | |||
| 2725 | M | M.HpySP301VIII (97% identity) | TCGA | M.Hpy5033ORF2725P |
| 2730 | exodeoxyribonuclease VII large subunit | |||
| 3135 | pseudaminic acid synthase | |||
| 3140 | R | R2.HpyPOR115ORF870P (77% identity) | Hpy5033ORF3140P | |
| 3145 | AAA family ATPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7755 | type III restriction endonuclease subunit R | |||
| 7760 | R | Hpy5026ORF2235P (91% identity) | Hpy5033ORF7765P | |
| 7765 | M | M.HpyPE130ORF6750P (95% identity) | M.Hpy5033ORF7765P | |
| 7770 | endonuclease | |||
| 7825 | rod shape-determining protein MreC | |||
| 7830 | R | HpyU433XVP (91% identity) | Hpy5033ORF7835P | |
| ??? | M | M.HpyI009ORF6950P (87% identity) | M.Hpy5033ORF7835P | |
| 7845 | response regulator | |||
| 3625 | ATP-dependent DNA helicase RecG | |||
| 3630 | M | M.HpyPE124ORF7095P (96% identity) | M.Hpy5033ORF3630P | |
| 3635 | R | HpyB14ORF7320P (95% identity) | Hpy5033ORF3630P | |
| 3640 | 95 aa hypothetical protein | |||